Gene omics information

Query gene ID	PtpAffx.205611.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.205611.1.S1_at	pmrna11077	hypothetical protein	-	3e+0	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.200893.1.S1_at	pmrna1754	-	-	9e-84	Atcg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.221351.1.S1_s_at	pmrna38197	hypothetical protein	-	7e-2	At4g24275	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.213957.1.S1_at	pmrna27202	hypothetical protein	-	1e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.206112.1.S1_at	pmrna12119	hypothetical protein	-	1e-2	At3g25490	wall-associated kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.212310.1.S1_at	pmrna24137	hypothetical protein	-	1e+0	At3g04220	disease resistance protein (TIR-NBS-LRR class), putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.3313.1.S1_at	DN495789	hypothetical protein	-	7e-11	At5g41260	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.221642.1.S1_at	pmrna38626	hypothetical protein	-	1e+0	At3g18990	VRN1 (REDUCED VERNALIZATION RESPONSE 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.7	97.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1	95.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	2e-131	470	PtpAffx.201798.1.S1_at	pmrna3581	hypothetical protein	-	7e-1	At4g23030	MATE efflux protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.211359.1.S1_x_at	pmrna22265	hypothetical protein	-	1e-14	At3g51620	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.211359.1.S1_s_at	pmrna22265	hypothetical protein	-	1e-14	At3g51620	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.211359.1.S1_at	pmrna22265	hypothetical protein	-	1e-14	At3g51620	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.203133.1.S1_at	pmrna6212	hypothetical protein	-	4e-10	At2g38250	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.222739.1.S1_s_at	pmrna40359	hypothetical protein	-	1e+0	At3g33494	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.212455.1.S1_at	pmrna24399	hypothetical protein	-	4e-1	At2g22490	CYCD2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.210207.1.S1_at	pmrna20103	c4-dicarboxylate transporter/malic acid transport protein	-	3e-1	At5g24030	SLAH3 (SLAC1 HOMOLOGUE 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g45010	834532	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.61949.1.S1_at	AW185936	-	-	4e-9	At3g18290	EMB2454 (embryo defective 2454)	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	HB31O12r_at	HB31O12r	-	-	7e+0	At4g32090	galactosyltransferase	C.G.	S.X.	Please select
0.01	4e-1	38	Oryza sativa	Os03g0696000	AK109661.1	-	Harpin-induced 1 domain containing protein	2e+0	At2g35658	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	TaAffx.26946.1.S1_at	CA682959	-	-	3e+0	At5g60440	AGL62 (Agamous-like 62)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1611431_at	CB002568	-	-	1e+0	At2g10965	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.17407.1.A1_at	CK145088	pectate lyase 12	-	4e+0	At4g34120	LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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