Gene omics information

Query gene ID	PtpAffx.205555.1.S1_s_at
Gene name	MIKC mads-box transcription factor /// hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.205555.1.S1_s_at	pmrna10986	MIKC mads-box transcription factor /// hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.40743.1.A1_at	DN485207	hypothetical protein	-	4e-1	At2g14095	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.225371.1.S1_at	pmrna44680	hypothetical protein	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.0	100.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
28.3	99.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
23.3	99.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.0	76.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.1	42.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.1	42.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.1	42.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	1275	PtpAffx.205555.1.S1_at	pmrna10986	hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.76	0	946	PtpAffx.201848.1.S1_at	pmrna3676	MIKC mads-box transcription factor	-	1e-13	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-4	48	PtpAffx.206108.1.S1_at	pmrna12111	hypothetical protein	-	9e-5	At4g37940	AGL21	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-4	46	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-4	46	PtpAffx.43839.1.S1_a_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-3	44	PtpAffx.204860.1.S1_at	pmrna9607	hypothetical protein	-	6e-12	At3g57390	AGL18	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.216801.1.S1_at	pmrna31825	hypothetical protein	-	2e+0	At1g53640	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.214541.1.S1_at	pmrna28257	hypothetical protein	-	4e-1	At1g13990	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.213598.1.S1_at	pmrna26555	hypothetical protein	-	4e-2	At3g54120	reticulon family protein (RTNLB12)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-11	69	Arabidopsis thaliana	At5g20240	832146	PI (PISTILLATA)	Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.44	1e-41	171	Glycine max	GmaAffx.41949.2.S1_s_at	AW733646	-	-	4e-6	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HR01N23u_at	HR01N23u	-	-	3e+0	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.11	8e-10	65	Oryza sativa	Os01g0883100	AY551924.1	-	PISTILLATA-like MADS box protein	1e-1	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-10	67	Triticum aestivum	Ta.4889.1.S1_at	AB107992.1	PISTILLATA-like MADS box protein	-	6e-4	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.40	2e-71	268	Vitis vinifera	1614123_at	CF373459	PISTILLATA-like MADS-box protein-like	-	8e-9	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.09	2e-13	75	Zea mays	Zm.335.1.S1_a_at	BM078498	Zea mays MADS16	-	3e-2	At3g57390	AGL18	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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