CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.205503.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.205503.1.S1_at pmrna10878 hypothetical protein - 7e-1 At1g68660 - S.X. H.G.
0.33 57.5 PtpAffx.205629.1.S1_at pmrna11121 hypothetical protein - 6e-2 At5g50920 CLPC1 S.X. H.G.
0.31 53.7 PtpAffx.203623.1.S1_at pmrna7181 NBS resistance protein - 6e-1 At2g19530 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.159319.1.A1_at CV277748 hypothetical protein - 1e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) S.X. H.G.
0.31 53.7 PtpAffx.200933.1.S1_at pmrna1836 hypothetical protein - 5e-1 At3g14225 GLIP4 S.X. H.G.
0.27 47.1 PtpAffx.217244.1.S1_at pmrna32431 hypothetical protein - 5e-5 At3g13040 myb family transcription factor S.X. H.G.
0.11 18.1 PtpAffx.217177.1.S1_at pmrna32333 hypothetical protein - 2e+1 At3g04430 anac049 (Arabidopsis NAC domain containing protein 49) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.4 99.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
22.4 99.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.5 98.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.7 97.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2 96.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.1 78.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-39 163 PtpAffx.211940.1.S1_at pmrna23445 hypothetical protein - 2e-113 At2g04270 RNEE/G (RNASE E/G-LIKE) C.G. S.X.
0.14 9e-26 117 PtpAffx.19725.1.S1_at CN518078 hypothetical protein - 3e-1 At1g36380 unknown protein C.G. S.X.
0.01 3e-1 36 PtpAffx.203439.1.S1_at pmrna6857 hypothetical protein - 6e-3 At1g04650 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.207825.1.S1_at pmrna15546 hypothetical protein - 1e-113 At1g79350 EMB1135 (embryo defective 1135) C.G. S.X.
0.01 4e+0 32 PtpAffx.3561.1.S1_at CV279910 - - 2e-11 At4g37080 unknown protein C.G. S.X.
0.01 4e+0 32 PtpAffx.222439.1.S1_at pmrna39840 aldehyde oxidase 2 - 1e-26 At1g04580 AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4) C.G. S.X.
0.02 4e+0 32 PtpAffx.215172.1.S1_at pmrna29214 hypothetical protein - 2e-180 Atcg01010 - C.G. S.X.
0.02 4e+0 32 PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.02 4e+0 32 PtpAffx.212921.1.S1_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Arabidopsis thaliana At1g68660 843196 - F:molecular_function unknown;P:protein catabolic process;C:unknown;BOP - - - C.G. S.X.
0.03 1e+0 34 Glycine max GmaAffx.72140.1.S1_at BU549812 - - 9e-8 At1g70070 EMB25 (EMBRYO DEFECTIVE 25) C.G. S.X.
0.03 4e-1 34 Hordeum vulgare EBem04_SQ003_J01_at EBem04_SQ003_J01 - - 3e-1 At1g28280 VQ motif-containing protein C.G. S.X.
0.02 9e-2 38 Oryza sativa Os02g0178800 AK066569.1 - Sterol desaturase family protein 2e-2 At5g57800 CER3 (ECERIFERUM 3) C.G. S.X.
0.06 5e-2 38 Triticum aestivum Ta.6445.2.S1_at CA594529 - - 3e+0 At4g01420 CBL5 (CALCINEURIN B-LIKE PROTEIN 5) C.G. S.X.
0.03 9e-1 32 Vitis vinifera 1614692_at CF518918 hypothetical protein LOC100264968 - 2e-60 At2g04030 CR88 C.G. S.X.
0.04 5e+0 30 Zea mays Zm.17444.1.A1_at CK347548 - - 2e+0 At1g72416 heat shock protein binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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