Gene omics information

Query gene ID PtpAffx.205481.1.S1_x_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedS.X.H.G.
0.5984.9PtpAffx.225031.1.S1_atpmrna44055hypothetical protein-1e-3At3g55550lectin protein kinase, putativeS.X.H.G.
0.5078.6PtpAffx.214482.1.S1_atpmrna28166hypothetical protein-4e-21At4g31000calmodulin-binding proteinS.X.H.G.
0.4875.4PtpAffx.11623.1.A1_atCV260515hypothetical protein-8e-25At5g09850transcription elongation factor-relatedS.X.H.G.
0.4673.7PtpAffx.20260.2.S1_a_atCV257316hypothetical protein-1e-3At4g22190unknown proteinS.X.H.G.
0.4673.7PtpAffx.13792.2.S1_atCV283738hypothetical protein-7e-14At4g10610CID12S.X.H.G.
0.2950.5PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.898.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.698.6GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
6.597.8GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
5.396.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
5.096.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.295.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.992.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9401271PtpAffx.205481.1.S1_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.714e-138492PtpAffx.201917.1.S1_atpmrna3818--4e-1At3g52550-C.G.S.X.
0.022e-138PtpAffx.217383.1.S1_atpmrna32628hypothetical protein-2e-4At3g17640leucine-rich repeat family proteinC.G.S.X.
0.026e-136PtpAffx.52902.1.A1_atCV231677hypothetical protein-2e-3At2g25820transcription factorC.G.S.X.
0.016e-136PtpAffx.214478.1.S1_atpmrna28157hypothetical protein-7e-25At5g58040ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])C.G.S.X.
0.026e-136PtpAffx.208449.1.S1_atpmrna16786hypothetical protein-2e+0At5g37440DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.026e-136PtpAffx.202155.1.S1_atpmrna4310hypothetical protein-5e-1At4g22740glycine-rich proteinC.G.S.X.
0.023e+034PtpAffx.35909.1.S1_atCV244075hypothetical protein-3e-2At3g55970oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.013e+034PtpAffx.289.1.S1_x_atAY515150.1--6e-20At5g15850COL1 (constans-like 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-136Arabidopsis thalianaAt5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBM---C.G.S.X.
0.033e+034Glycine maxGmaAffx.55928.1.S1_atBQ612397--3e+0At5g19315-C.G.S.X.
0.039e-134Hordeum vulgareHVSMEc0005D12r2_x_atHVSMEc0005D12r2--8e-1At5g08185MIR162A (MICRORNA 162A)C.G.S.X.
0.039e-136Oryza sativaOsAffx.8471.1.A1_at---0C.G.S.X.
0.042e+034Triticum aestivumTaAffx.30372.1.S1_atCA625808--4e+0At2g37110unknown proteinC.G.S.X.
0.052e+032Vitis vinifera1620018_atCF203824.1--2e+0At5g44568unknown proteinC.G.S.X.
0.038e-134Zea maysZmAffx.465.1.A1_atAI677343DTW domain containing protein-8e-1At1g02450NIMIN1 (NIM1-INTERACTING 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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