CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.205416.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.205416.1.S1_at pmrna10719 hypothetical protein - 2e-21 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.15 25.3 PtpAffx.218751.1.S1_at pmrna34474 - - 1e-7 At3g06110 MKP2 (MAPK PHOSPHATASE 2) S.X. H.G.
0.12 19.6 PtpAffx.119972.1.A1_at CK090441 gibberellin 20-oxidase - 1e-19 At5g51810 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) S.X. H.G.
0.09 14.6 PtpAffx.203355.1.S1_at pmrna6683 hypothetical protein - 6e-1 Atmg00450 - S.X. H.G.
0.07 11.6 PtpAffx.207126.1.S1_at pmrna14136 hypothetical protein - 4e+0 At5g60130 transcriptional factor B3 family protein S.X. H.G.
0.01 2.2 PtpAffx.222153.1.S1_at pmrna39394 hypothetical protein - 3e-2 Atmg00030 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.3 99.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.9 98.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.7 97.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4 95.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.89 0 753 PtpAffx.201979.1.S1_at pmrna3951 hypothetical protein - 3e-26 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.89 0 753 PtpAffx.201979.1.S1_x_at pmrna3951 hypothetical protein - 3e-26 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.32 2e-16 87 PtpAffx.201225.1.S1_s_at pmrna2438 hypothetical protein - 6e-24 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.29 2e-16 87 PtpAffx.201227.1.S1_at pmrna2440 hypothetical protein - 7e-24 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.14 4e-11 69 PtpAffx.204772.1.S1_at pmrna9397 hypothetical protein - 1e-25 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.03 3e-5 50 Ptp.3453.1.S1_at CV243068 MIKC mads-box transcription factor - 3e-21 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
0.11 5e-4 46 PtpAffx.201229.1.S1_x_at pmrna2442 hypothetical protein - 4e-13 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.11 5e-4 46 PtpAffx.201229.1.S1_s_at pmrna2442 hypothetical protein - 4e-13 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.03 2e-3 44 PtpAffx.99434.1.S1_at CV245843 hypothetical protein - 6e-31 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-21 103 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.15 2e-3 44 Glycine max GmaAffx.71421.1.S1_at AW706936 - - 4e-21 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.07 4e-2 38 Hordeum vulgare Contig4517_at Contig4517 - - 1e-7 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.23 3e-15 83 Oryza sativa Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.07 3e-8 59 Triticum aestivum TaAffx.1124.1.S1_at BJ233977 - - 1e+0 At2g22120 protein binding / zinc ion binding C.G. S.X.
0.04 4e-4 44 Vitis vinifera 1612606_at AF373602.1 MADS-box protein 3 - 7e-31 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.21 3e-27 121 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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