CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.205177.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) S.X. H.G.
0.61 87.0 PtpAffx.225253.1.S1_at pmrna44474 hypothetical protein - 1e-2 At5g44410 FAD-binding domain-containing protein S.X. H.G.
0.55 82.2 PtpAffx.161461.1.S1_at CV130586 hypothetical protein - 1e-49 At3g57550 AGK2 (GUANYLATE KINASE) S.X. H.G.
0.14 23.5 PtpAffx.159916.1.A1_at CV255317 hypothetical protein - 1e+0 At5g02090 unknown protein S.X. H.G.
0.13 21.6 Ptp.7558.1.A1_at CA926122 hypothetical protein - 6e-71 At5g13490 AAC2 (ADP/ATP carrier 2) S.X. H.G.
0.10 16.3 PtpAffx.224513.1.S1_s_at pmrna43126 hypothetical protein - 1e-5 At4g19810 glycosyl hydrolase family 18 protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.3 99.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
24.9 99.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.9 99.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.2 99.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.7 97.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9 87.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.9 74.2 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.7 69.4 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 1e-155 549 PtpAffx.219447.1.S1_s_at pmrna35368 hypothetical protein - 4e-42 At2g22290 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) C.G. S.X.
0.50 1e-38 161 Ptp.5567.1.S1_at CK098494 - - 1e-44 At2g44610 RAB6A C.G. S.X.
0.35 6e-31 135 PtpAffx.19719.1.A1_at CV255300 - - 3e-52 At2g44610 RAB6A C.G. S.X.
0.31 9e-24 111 PtpAffx.3422.1.S1_at CV266812 hypothetical protein - 6e-75 At2g44610 RAB6A C.G. S.X.
0.04 7e-3 42 PtpAffx.4217.1.A1_s_at CV261602 hypothetical protein - 7e-71 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.02 3e-2 40 Ptp.6386.1.S1_at CV256915 hypothetical protein - 2e-49 At5g65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) C.G. S.X.
0.03 3e-2 40 Ptp.4475.1.S1_s_at BU826793 hypothetical protein - 3e-55 At5g03530 RABC2A (RAB GTPASE HOMOLOG C2A) C.G. S.X.
0.03 3e-2 40 Ptp.1488.1.S1_a_at CV243292 hypothetical protein - 8e-34 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) C.G. S.X.
0.04 1e-1 38 PtpAffx.4217.2.S1_s_at CV250228 hypothetical protein - 2e-28 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 4e-93 341 Arabidopsis thaliana At5g10260 830890 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA - - - C.G. S.X.
0.44 2e-31 137 Glycine max Gma.3568.1.S1_x_at BI941735 - - 1e-54 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.46 5e-60 230 Hordeum vulgare Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A C.G. S.X.
0.48 8e-25 115 Oryza sativa OsAffx.16506.1.S1_at - - - 0 C.G. S.X.
0.43 8e-33 141 Triticum aestivum Ta.28749.1.S1_a_at CK213968 - - 2e-59 At2g44610 RAB6A C.G. S.X.
0.51 1e-50 198 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.31 3e-24 111 Zea mays Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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