CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.205088.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.205088.1.S1_at pmrna10083 hypothetical protein - 2e-3 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein S.X. H.G.
0.36 61.6 PtpAffx.911.1.A1_at CV266781 hypothetical protein - 3e-5 At1g76560 CP12-3 S.X. H.G.
0.33 57.5 PtpAffx.212628.1.S1_at pmrna24722 hypothetical protein - 5e-12 At5g53170 FTSH11 (FtsH protease 11) S.X. H.G.
0.29 50.5 PtpAffx.120252.1.S1_s_at CX171411 hypothetical protein - 6e-6 At4g00730 ANL2 (ANTHOCYANINLESS 2) S.X. H.G.
0.24 41.8 PtpAffx.211806.1.S1_at pmrna23151 hypothetical protein - 2e-37 At2g48120 PAC (PALE CRESS) S.X. H.G.
0.23 40.5 PtpAffx.202114.1.S1_s_at pmrna4230 hypothetical protein - 5e-11 At1g02150 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.23 40.5 PtpAffx.129218.1.S1_at CV256638 hypothetical protein - 4e-8 At5g61760 ATIPK2BETA S.X. H.G.
0.22 38.3 PtpAffx.205793.1.S1_at pmrna11455 - - 2e-9 At1g45110 tetrapyrrole methylase family protein S.X. H.G.
0.18 30.8 PtpAffx.10139.1.A1_at CV245605 hypothetical protein - 8e-10 At1g10830 sodium symporter-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 97.9 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.8 96.4 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 1e-132 474 PtpAffx.16415.1.A1_at DN485807 hypothetical protein - 4e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) C.G. S.X.
0.13 4e-52 206 PtpAffx.223495.1.S1_s_at pmrna41529 hypothetical protein - 9e-1 At5g60960 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.13 4e-52 206 PtpAffx.223495.1.S1_at pmrna41529 hypothetical protein - 9e-1 At5g60960 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.05 5e-8 59 Ptp.669.1.S1_at AY935509.1 hypothetical protein - 2e-23 At3g03690 UNE7 (unfertilized embryo sac 7) C.G. S.X.
0.10 2e-7 57 PtpAffx.78018.1.S1_at CV229017 hypothetical protein - 3e-12 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.10 2e-7 57 PtpAffx.78018.1.S1_a_at CV229017 hypothetical protein - 3e-12 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.03 8e-7 56 PtpAffx.209971.1.S1_at pmrna19663 hypothetical protein - 2e-16 At3g15350 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.03 8e-7 56 Ptp.1609.1.A1_s_at CA825364 hypothetical protein - 2e-12 At5g39990 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.03 3e-6 54 PtpAffx.28131.1.A1_at CK096596 hypothetical protein - 1e-14 At3g15350 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-3 44 Arabidopsis thaliana At5g15050 831357 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO - - - C.G. S.X.
0.34 8e-35 149 Glycine max GmaAffx.81520.1.S1_at BM521529 - - 5e-5 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.16 3e-1 36 Hordeum vulgare Contig14045_at Contig14045 - - 2e-18 At3g03690 UNE7 (unfertilized embryo sac 7) C.G. S.X.
0.23 1e-21 105 Oryza sativa Os06g0602800 AK070134.1 - Conserved hypothetical protein 2e-7 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.05 6e-1 36 Triticum aestivum Ta.13955.1.A1_at BQ752694 - - 4e-14 At4g03340 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.18 9e-25 113 Vitis vinifera 1622113_at CF209612 hypothetical protein LOC100245719 - 4e-61 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.02 9e-1 34 Zea mays ZmAffx.694.1.S1_at AI737422 - - 8e-1 At4g02160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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