Gene omics information

Query gene ID	PtpAffx.205011.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.205011.1.S1_at	pmrna9914	hypothetical protein	-	2e-3	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.214538.1.S1_s_at	pmrna28252	hypothetical protein	-	5e+0	At3g62320	nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.207961.1.S1_x_at	pmrna15807	hypothetical protein	-	2e-6	At1g13470	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.214573.1.S1_at	pmrna28330	hypothetical protein	-	9e-11	At1g52570	PLDALPHA2 (phosphlipase d alpha 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.88225.1.S1_at	CV275599	hypothetical protein	-	1e+0	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.91700.2.S1_at	CV273319	hypothetical protein	-	1e-19	At4g38470	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.203108.1.S1_at	pmrna6161	hypothetical protein	-	2e-1	At2g02410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.127432.1.A1_at	CV257984	hypothetical protein	-	4e-4	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.114045.1.A1_at	CV273606	hypothetical protein	-	1e+0	At5g13570	DCP2 (DECAPPING 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.1	100.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
28.5	99.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.4	99.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.6	66.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.5	63.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
0.5	63.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	9e-22	105	PtpAffx.216630.1.S1_at	pmrna31541	hypothetical protein	-	6e-1	At5g64180	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	4e-15	83	PtpAffx.216629.1.S1_at	pmrna31540	hypothetical protein	-	4e-1	At5g28390	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-2	40	PtpAffx.21922.1.A1_at	CV235106	flavonol synthase 4	-	3e-3	At5g08640	FLS (FLAVONOL SYNTHASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.208550.1.S1_at	pmrna16966	hypothetical protein	-	2e-12	At3g21420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.113900.1.A1_at	CV279648	aquaporin, MIP family, PIP subfamily	-	1e-2	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.5465.2.A1_x_at	CV257617	aquaporin, MIP family, PIP subfamily	-	9e-68	At2g16850	PIP2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.5465.1.A1_at	CK319074	aquaporin, MIP family, PIP subfamily	-	3e-67	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.5465.1.A1_x_at	CK319074	aquaporin, MIP family, PIP subfamily	-	3e-67	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.207047.1.S1_at	pmrna13961	hypothetical protein	-	4e-1	At3g18640	zinc finger protein-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-3	44	Arabidopsis thaliana	At4g25310	828634	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-22	107	Glycine max	GmaAffx.90841.1.S1_s_at	CF806566	-	-	6e-2	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig15956_at	Contig15956	-	-	7e-1	At4g00130	-	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	OsAffx.27866.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Triticum aestivum	Ta.5546.3.S1_a_at	CA619711	-	-	4e+0	At4g19515	disease resistance family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613651_at	CB348803	hypothetical protein LOC100266045	-	1e-3	At5g07050	-	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	ZmAffx.1085.1.A1_at	AW018111	zinc finger, C3HC4 type family protein	-	3e+0	At1g67035	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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