Gene omics information

Query gene ID	PtpAffx.204936.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	97.7	PtpAffx.204936.1.S1_at	pmrna9772	hypothetical protein	-	7e-7	At3g46690	UDP-glucoronosyl/UDP-glucosyl transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.209305.1.S1_at	pmrna18391	hypothetical protein	-	2e+0	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.152074.1.S1_s_at	CF236322	hypothetical protein	-	3e-42	At3g58490	phosphatidic acid phosphatase family protein / PAP2 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.141946.1.S1_s_at	CN518150	hypothetical protein	-	2e-23	At2g22370	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.5635.1.S1_s_at	BU809496	hypothetical protein	-	1e-4	At2g46170	reticulon family protein (RTNLB5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.45196.1.S1_at	CV229115	hypothetical protein	-	5e-9	At4g28300	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.204724.1.S1_x_at	pmrna9308	hypothetical protein	-	8e-22	At2g14835	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.12458.1.S1_at	CV226822	-	-	2e-8	At5g20650	COPT5	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.6025.1.S1_at	CA826170	hypothetical protein	-	3e-33	At4g05590	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.25457.2.S1_at	CF119695	hypothetical protein	-	1e-22	At4g17486	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.0	98.4	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
7.7	98.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.7	97.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-20	101	PtpAffx.48490.1.A1_at	BP934618	hypothetical protein	-	4e-13	At3g46670	UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-10	67	PtpAffx.343.1.S1_at	CV269989	-	-	6e-14	At5g05860	UGT76C2	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-6	54	PtpAffx.13797.1.A1_s_at	CK091254	hypothetical protein	-	4e-4	At5g05860	UGT76C2	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-3	46	PtpAffx.214828.1.S1_at	pmrna28702	-	-	3e-4	At2g26480	UGT76D1 (UDP-GLUCOSYL TRANSFERASE 76D1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.201741.1.S1_at	pmrna3459	hypothetical protein	-	6e-4	At4g00910	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	Ptp.2617.1.S1_at	AY442257.1	hypothetical protein	-	2e-6	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.936.2.A1_at	CA823757	hypothetical protein	-	4e-85	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.29621.1.A1_at	CV226870	hypothetical protein	-	6e-4	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	34	PtpAffx.224381.1.S1_at	pmrna42859	hypothetical protein	-	8e-4	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-7	56	Arabidopsis thaliana	At3g46690	823822	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-2	40	Glycine max	Gma.2961.1.S1_at	CD415704	-	-	2e-4	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	HV14F17u_at	HV14F17u	-	-	2e-1	At3g60961	ATP binding / nucleobase, nucleoside, nucleotide kinase	C.G.	S.X.	Please select
0.03	4e-4	48	Oryza sativa	Os11g0444000	AK099588.1	-	UDP-glucosyltransferase BX8	2e-1	At5g05870	UGT76C1 (UDP-glucosyl transferase 76C1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	TaAffx.22746.1.S1_at	CA745677	-	-	1e+1	At5g03030	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.03	3e-1	36	Zea mays	Zm.18507.1.A1_at	CO533969	hypothetical protein LOC100194073	-	2e-5	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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