Gene omics information

Query gene ID	PtpAffx.204886.1.S1_at
Gene name	white-brown-complex ABC transporter family
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.204886.1.S1_at	pmrna9652	white-brown-complex ABC transporter family	-	5e-46	At1g51500	CER5 (ECERIFERUM 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.225099.1.S1_at	pmrna44197	hypothetical protein	-	3e-109	At4g30020	subtilase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.205154.1.S1_at	pmrna10202	hypothetical protein	-	2e-1	At2g01870	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.203765.1.S1_at	pmrna7437	hypothetical protein	-	8e-1	At4g28680	tyrosine decarboxylase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.134527.1.A1_at	CV232655	hypothetical protein	-	1e-6	At1g28110	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.208642.1.S1_at	pmrna17154	hypothetical protein	-	1e-1	At4g14660	NRPE7	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.5	98.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.9	98.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.9	98.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.6	97.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.3	97.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.9	97.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	2395	PtpAffx.200812.1.S1_at	pmrna1591	white-brown-complex ABC transporter family	-	4e-28	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	3e-97	357	PtpAffx.204885.1.S1_at	pmrna9651	white-brown-complex ABC transporter family	-	5e-18	At1g51460	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	4e-81	303	PtpAffx.200813.1.S1_at	pmrna1592	white-brown-complex ABC transporter family	-	3e-10	At1g51460	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	3e-63	244	PtpAffx.69848.1.A1_at	CV241133	-	-	3e-14	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	1e-19	99	PtpAffx.213339.1.S1_at	pmrna26093	white-brown-complex ABC transporter family	-	1e-12	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	1e-4	50	PtpAffx.213340.1.S1_at	pmrna26094	white-brown-complex ABC transporter family	-	2e-5	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-3	46	PtpAffx.214658.1.S1_s_at	pmrna28467	white-brown-complex ABC transporter family /// white-brown-complex ABC transporter family	-	7e-1	At5g53690	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-3	46	PtpAffx.205167.1.S1_s_at	pmrna10229	white-brown-complex ABC transporter family /// white-brown-complex ABC transporter family	-	9e-1	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-2	42	Ptp.5459.1.S1_at	CV257765	hypothetical protein	-	6e-74	At1g55490	CPN60B (CHAPERONIN 60 BETA)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	5e-46	186	Arabidopsis thaliana	At1g51500	841575	CER5 (ECERIFERUM 5)	Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	3e-48	194	Glycine max	Gma.16610.1.S1_at	CD404590	-	-	1e-20	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please select
0.03	4e-8	59	Hordeum vulgare	Contig11350_at	Contig11350	-	-	3e-7	At3g21090	ABC transporter family protein	C.G.	S.X.	Please select
0.02	9e-3	44	Oryza sativa	Os04g0528300	AK064945.1	-	ABC transporter related domain containing protein	2e-12	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Triticum aestivum	Ta.18028.1.S1_at	CA627434	-	-	4e+0	At3g23030	IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)	C.G.	S.X.	Please select
0.15	2e-24	113	Vitis vinifera	1608408_at	CF404680	hypothetical protein LOC100267086	-	7e-9	At1g51500	CER5 (ECERIFERUM 5)	C.G.	S.X.	Please select
0.03	2e-6	54	Zea mays	Zm.8050.1.A1_at	CF244335	ABC transporter C05D10.3 in chromosome III	-	2e-19	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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