CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204811.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.204811.1.S1_at pmrna9484 hypothetical protein - 1e-14 At5g13500 unknown protein S.X. H.G.
0.50 78.6 Ptp.3736.1.A1_at CV256427 hypothetical protein - 3e-24 At3g54020 phosphatidic acid phosphatase-related / PAP2-related S.X. H.G.
0.50 78.6 PtpAffx.11720.1.S1_at CV256791 hypothetical protein - 1e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) S.X. H.G.
0.50 78.6 Ptp.5068.1.S1_a_at DN483716 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.44 71.9 Ptp.5068.2.A1_a_at CV247817 hypothetical protein - 6e-3 At3g29170 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.249.310.S1_at BU830668 hypothetical protein - 4e-12 At5g42050 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.7 98.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2 96.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2147 PtpAffx.204811.1.S1_x_at pmrna9484 hypothetical protein - 1e-14 At5g13500 unknown protein C.G. S.X.
0.94 0 1592 PtpAffx.200891.1.S1_x_at pmrna1752 hypothetical protein - 7e-19 At5g13500 unknown protein C.G. S.X.
0.94 0 1592 PtpAffx.200891.1.S1_at pmrna1752 hypothetical protein - 7e-19 At5g13500 unknown protein C.G. S.X.
0.45 4e-107 389 PtpAffx.218266.1.S1_s_at pmrna33818 hypothetical protein - 4e-5 At5g13500 unknown protein C.G. S.X.
0.31 1e-36 155 PtpAffx.39427.1.S1_at CK093545 hypothetical protein - 5e-22 At5g13500 unknown protein C.G. S.X.
0.11 9e-19 95 PtpAffx.283.15.S1_at CV243297 hypothetical protein - 8e-71 At5g25265 unknown protein C.G. S.X.
0.25 4e-18 93 Ptp.6564.1.S1_at CF228663 hypothetical protein - 8e-33 At5g13500 unknown protein C.G. S.X.
0.07 6e-17 89 PtpAffx.283.16.S1_s_at CV226238 hypothetical protein - 6e-65 At5g25265 unknown protein C.G. S.X.
0.07 6e-17 89 PtpAffx.283.16.S1_at CV226238 - - 6e-65 At5g25265 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-14 81 Arabidopsis thaliana At5g13500 831194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO - - - C.G. S.X.
0.30 6e-23 109 Glycine max Gma.4953.1.S1_at BM271325 - - 1e-22 At5g13500 unknown protein C.G. S.X.
0.11 1e-6 54 Hordeum vulgare Contig2589_at Contig2589 - - 1e-3 At5g13500 unknown protein C.G. S.X.
0.17 2e-2 42 Oryza sativa Os05g0386000 AK121888.1 - Conserved hypothetical protein 1e-13 At5g25265 unknown protein C.G. S.X.
0.16 3e-9 63 Triticum aestivum TaAffx.88842.1.S1_at CA643703 - - 2e-12 At5g13500 unknown protein C.G. S.X.
0.16 2e-10 65 Vitis vinifera 1619465_at CF519054 hypothetical protein LOC100249264 - 7e-65 At5g25265 unknown protein C.G. S.X.
0.08 1e-9 63 Zea mays Zm.2953.1.S1_at CF054623 hypothetical protein LOC100276099 - 3e-6 At5g13500 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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