CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204743.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.217345.1.S1_s_at pmrna32563 hypothetical protein - 2e-9 At4g22030 F-box family protein S.X. H.G.
0.50 78.6 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) S.X. H.G.
0.40 67.0 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative S.X. H.G.
0.33 57.5 PtpAffx.22638.1.S1_at DN503417 hypothetical protein - 4e-1 At5g52870 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.8 99.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
15.9 99.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
10.9 99.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.4 98.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.74 2e-43 176 PtpAffx.201201.1.S1_at pmrna2383 hypothetical protein - 1e+0 At3g52950 CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein C.G. S.X.
0.14 3e-2 40 PtpAffx.204742.1.S1_at pmrna9336 hypothetical protein - 1e+0 At2g36630 unknown protein C.G. S.X.
0.11 3e-2 40 PtpAffx.201200.1.S1_at pmrna2382 hypothetical protein - 4e+0 At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.210578.1.S1_at pmrna20747 hypothetical protein - 1e-27 At5g66540 - C.G. S.X.
0.04 4e-1 36 PtpAffx.65149.1.A1_at CK093111 hypothetical protein - 3e+0 At4g22235 - C.G. S.X.
0.03 4e-1 36 PtpAffx.28949.1.S1_s_at BU869226 hypothetical protein - 2e+0 At5g19650 OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) C.G. S.X.
0.04 4e-1 36 PtpAffx.206321.1.S1_at pmrna12547 hypothetical protein - 2e-2 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.03 4e-1 36 PtpAffx.19179.2.A1_a_at CK096989 hypothetical protein - 4e-4 At3g49800 BSD domain-containing protein C.G. S.X.
0.02 4e-1 36 PtpAffx.11154.2.S1_at CV238151 hypothetical protein - 7e-10 At1g68490 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.75176.1.S1_at BF070694 - - 2e-20 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig3967_at Contig3967 - - 6e-16 At5g47040 LON2 (LON PROTEASE 2) C.G. S.X.
0.02 2e+0 34 Oryza sativa OsAffx.2602.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.65630.1.S1_at BJ235341 - - 3e+0 At4g30410 transcription factor C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1609773_at CB978867 hypothetical protein LOC100261732 - 1e+0 At3g11600 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.718.1.A1_s_at AI739895 hypothetical protein LOC100191952 - 3e+0 At3g50780 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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