CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204686.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.204686.1.S1_at pmrna9231 hypothetical protein - 2e-18 At3g19430 late embryogenesis abundant protein-related / LEA protein-related S.X. H.G.
0.23 40.5 PtpAffx.222491.1.S1_at pmrna39952 hypothetical protein - 8e-1 At2g47270 transcription factor/ transcription regulator S.X. H.G.
0.01 2.2 PtpAffx.207947.1.S1_at pmrna15771 hypothetical protein - 2e-1 At4g22950 AGL19 (AGAMOUS-LIKE 19) S.X. H.G.
0.00 0.4 PtpAffx.6105.4.S1_at CV266789 hypothetical protein - 7e-2 At3g48890 ATMP2 S.X. H.G.
0.00 0.4 PtpAffx.211535.1.S1_at pmrna22605 hypothetical protein - 6e-2 At5g19800 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.00 0.4 RPTR-Ptp-J01636-1_at RPTR-Ptp-J01636-1 - - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.1 99.0 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.6 98.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.6 97.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1 95.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-16 87 PtpAffx.204477.1.S1_at pmrna8789 hypothetical protein - 6e-6 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.04 3e-5 50 PtpAffx.216102.1.S1_at pmrna30682 - - 6e-13 At4g27400 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.05 2e-3 44 PtpAffx.209991.1.S1_at pmrna19711 hypothetical protein - 8e-6 At1g54890 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.02 5e-1 36 PtpAffx.50410.1.A1_at CV245664 - - 1e-1 At5g59110 subtilisin-like serine protease-related C.G. S.X.
0.01 5e-1 36 PtpAffx.208146.1.S1_x_at pmrna16189 hypothetical protein - 1e-2 At3g22380 TIC (TIME FOR COFFEE) C.G. S.X.
0.01 5e-1 36 PtpAffx.208146.1.S1_at pmrna16189 hypothetical protein - 1e-2 At3g22380 TIC (TIME FOR COFFEE) C.G. S.X.
0.03 2e+0 34 PtpAffx.93539.1.A1_at BP933651 - - 6e-2 At4g27690 VPS26B (VACUOLAR PROTEIN SORTING 26B) C.G. S.X.
0.02 2e+0 34 PtpAffx.56522.1.A1_at CV262002 hypothetical protein - 6e-7 At5g02850 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.41125.1.S1_at CK088539 hypothetical protein - 5e-4 At1g30070 SGS domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-18 93 Arabidopsis thaliana At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.14132.2.A1_at CD415593 - - 2e-1 At5g15220 ribosomal protein L27 family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEm0012P04r2_s_at HVSMEm0012P04r2 - - 3e+0 At3g55646 unknown protein C.G. S.X.
0.09 3e-6 54 Oryza sativa Os01g0968200 NM_189425.1 - Root cap family protein 2e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.04 2e-2 40 Triticum aestivum TaAffx.86377.1.S1_at CA609951 - - 3e+0 At4g05553 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1615525_at CF211579 hypothetical protein LOC100263802 - 3e-4 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
0.07 2e-7 56 Zea mays Zm.52.1.A1_at AB021175.1 root cap protein 1 - 2e+0 At5g60520 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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