Gene omics information

Query gene ID PtpAffx.204632.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.204632.1.S1_atpmrna9105hypothetical protein-1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)S.X.H.G.
0.8096.0Ptp.7695.1.S1_s_atBU862504hypothetical protein-2e-2At5g02020unknown proteinS.X.H.G.
0.6086.0Ptp.3978.1.S1_atCX656376--3e-12At2g37130peroxidase 21 (PER21) (P21) (PRXR5)S.X.H.G.
0.6086.0PtpAffx.225008.1.S1_atpmrna43994hypothetical protein-2e+0At5g65580unknown proteinS.X.H.G.
0.5078.6PtpAffx.9749.1.A1_atDN491489hypothetical protein-4e+0At5g04790unknown proteinS.X.H.G.
0.3964.6PtpAffx.152294.1.S1_atCX653673--5e-1At3g59440calcium-binding protein, putativeS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.599.3GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
10.199.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
8.598.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
8.198.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
6.898.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
6.397.7GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.4401164PtpAffx.216341.1.S1_s_atpmrna31055hypothetical protein-2e+0At2g27310F-box family proteinC.G.S.X.
0.541e-100369PtpAffx.220470.1.S1_x_atpmrna36863hypothetical protein-1e-4At2g15080AtRLP19 (Receptor Like Protein 19)C.G.S.X.
0.245e-72274PtpAffx.210365.1.S1_x_atpmrna20372hypothetical protein-1e+0At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.285e-72274PtpAffx.210349.1.S1_s_atpmrna20345hypothetical protein-2e-1At1g79580SMB (SOMBRERO)C.G.S.X.
0.482e-68262PtpAffx.216486.1.S1_x_atpmrna31272hypothetical protein-8e-2At1g33600leucine-rich repeat family proteinC.G.S.X.
0.503e-67258PtpAffx.220955.1.S1_x_atpmrna37453hypothetical protein-4e-4At1g68400leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.503e-67258PtpAffx.220955.1.S1_atpmrna37453hypothetical protein-4e-4At1g68400leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.513e-67258PtpAffx.210324.1.S1_x_atpmrna20315hypothetical protein-6e-6At3g05660AtRLP33 (Receptor Like Protein 33)C.G.S.X.
0.481e-66256PtpAffx.210320.1.S1_atpmrna20310hypothetical protein-4e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.011e-140Arabidopsis thalianaAt5g50200835085WR3 (WOUND-RESPONSIVE 3)Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.---C.G.S.X.
0.016e-138Glycine maxGmaAffx.4882.2.S1_atAW471533--2e-17At1g18800NRP2 (NAP1-RELATED PROTEIN 2)C.G.S.X.
0.018e-136Hordeum vulgareContig18091_atContig18091--2e+0At5g02020unknown proteinC.G.S.X.
0.018e-138Oryza sativaOs02g0190500AK111710.1-Leucine-rich repeat transmembrane protein kinase 22e-18At4g22130SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)C.G.S.X.
0.013e-242Triticum aestivumTaAffx.117174.1.S1_atBQ608917--4e+0At3g27460unknown proteinC.G.S.X.
0.018e-342Vitis vinifera1607940_atBQ800262hypothetical protein LOC100261463-6e-1At1g69470unknown proteinC.G.S.X.
0.013e+034Zea maysZm.15593.1.A1_atCD448421--3e+0At4g31300PBA1C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage