CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204628.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.204628.1.S1_s_at pmrna9099 hypothetical protein - 3e+0 At4g00232 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein S.X. H.G.
0.47 74.6 PtpAffx.209407.1.S1_at pmrna18634 hypothetical protein - 2e-39 At2g38970 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.38 63.7 Ptp.2035.1.S1_s_at BU894397 hypothetical protein - 3e-21 At4g24060 Dof-type zinc finger domain-containing protein S.X. H.G.
0.31 53.7 PtpAffx.9361.1.A1_at CV241621 hypothetical protein - 1e-6 At1g77660 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related S.X. H.G.
0.26 45.2 PtpAffx.221194.1.S1_x_at pmrna37884 hypothetical protein - 1e-2 At5g42830 transferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.2 99.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.3 98.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2504 PtpAffx.204628.1.S1_at pmrna9099 hypothetical protein - 3e+0 At4g00232 unknown protein C.G. S.X.
0.71 0 1205 PtpAffx.204629.1.S1_at pmrna9100 hypothetical protein - 7e-1 At4g08460 protein binding / zinc ion binding C.G. S.X.
0.01 2e-1 38 PtpAffx.222879.1.S1_at pmrna40583 hypothetical protein - 9e-1 At4g07820 pathogenesis-related protein, putative C.G. S.X.
0.01 2e-1 38 PtpAffx.204726.1.S1_at pmrna9310 - - 1e-6 At3g19620 glycosyl hydrolase family 3 protein C.G. S.X.
0.02 9e-1 36 PtpAffx.90699.1.A1_at CK096500 - - 3e-5 At5g18910 protein kinase family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.69019.1.A1_at CV273744 hypothetical protein - 8e-6 At4g33420 peroxidase, putative C.G. S.X.
0.01 9e-1 36 PtpAffx.208533.1.S1_at pmrna16931 hypothetical protein - 2e-13 At5g18910 protein kinase family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.138621.2.S1_a_at AJ767138 hypothetical protein - 6e-12 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.97935.1.A1_at CV264934 hypothetical protein - 2e-41 At1g06470 phosphate translocator-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At4g00232 826492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.02 2e-1 38 Glycine max GmaAffx.84491.2.A1_at AW101089 - - 2e-1 At4g09462 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig14735_at Contig14735 - - 6e-6 At1g12470 Pep3/Vps18/deep orange family protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os12g0409600 CB645117 - - 6e+0 At5g18300 anac088 (Arabidopsis NAC domain containing protein 88) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.106559.1.S1_s_at CA716149 - - 2e+1 Atmg01060 - C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1615421_at CF516532 hypothetical protein LOC100245217 - 2e-8 At1g69230 SP1L2 (SPIRAL1-LIKE2) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4439.1.A1_a_at CA404865 - - 2e+1 Atmg01240 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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