CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204436.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.204436.1.S1_at pmrna8713 hypothetical protein - 7e-1 At1g24000 Bet v I allergen family protein S.X. H.G.
0.31 53.7 PtpAffx.218672.1.S1_at pmrna34376 hypothetical protein - 3e-1 At1g66380 MYB114 (myb domain protein 114) S.X. H.G.
0.27 47.1 PtpAffx.204515.1.S1_at pmrna8859 hypothetical protein - 2e-1 At4g01850 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) S.X. H.G.
0.24 41.8 PtpAffx.204943.1.S1_at pmrna9782 hypothetical protein - 3e-7 At5g59130 subtilase family protein S.X. H.G.
0.21 36.5 PtpAffx.67703.1.S1_at BU871250 - - 1e-1 At3g54925 - S.X. H.G.
0.19 32.7 PtpAffx.8131.8.S1_at CV270594 - - 2e-1 At3g58150 - S.X. H.G.
0.13 21.6 PtpAffx.217202.1.S1_at pmrna32369 hypothetical protein - 1e-2 At3g60260 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.11 18.1 PtpAffx.37786.1.A1_at CV239459 - - 4e+0 At5g14800 P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) S.X. H.G.
0.11 18.1 PtpAffx.200027.1.S1_at pmrna46 hypothetical protein - 9e-1 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 99.7 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.4 98.2 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.2 98.1 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.9 98.0 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3 95.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3 95.8 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-27 121 PtpAffx.200483.1.S1_at pmrna973 hypothetical protein - 3e+0 At1g09140 SF2/ASF-like splicing modulator (SRP30) C.G. S.X.
0.20 7e-20 97 PtpAffx.206773.1.S1_at pmrna13449 hypothetical protein - 6e-1 At4g19340 - C.G. S.X.
0.37 3e-16 85 PtpAffx.205358.1.S1_at pmrna10607 hypothetical protein - 3e+0 At2g21490 LEA (DEHYDRIN LEA) C.G. S.X.
0.37 1e-15 83 PtpAffx.215659.1.S1_at pmrna29979 hypothetical protein - 6e-1 At3g56790 RNA splicing factor-related C.G. S.X.
0.31 7e-11 67 PtpAffx.212256.1.S1_at pmrna24024 hypothetical protein - 3e+0 At4g37940 AGL21 C.G. S.X.
0.23 1e-9 63 PtpAffx.214073.1.S1_at pmrna27408 hypothetical protein - 2e+0 At1g26916 unknown protein C.G. S.X.
0.26 2e-8 59 PtpAffx.213571.1.S1_at pmrna26514 hypothetical protein - 6e-1 At3g17668 ENA (ENHANCER OF ATNSI ACTIVITY) C.G. S.X.
0.06 6e-2 38 PtpAffx.211885.1.S1_at pmrna23340 hypothetical protein - 3e+0 At5g13825 unknown protein C.G. S.X.
0.01 6e-2 38 PtpAffx.210202.1.S1_at pmrna20097 hypothetical protein - 2e-24 At3g19180 ARC6H C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Arabidopsis thaliana At1g24000 839012 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P - - - C.G. S.X.
0.07 2e-1 36 Glycine max GmaAffx.81233.1.A1_at BE823605 - - 3e+0 At5g58650 PSY1 (plant peptide containing sulfated tyrosine 1) C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HY10H16u_x_at HY10H16u - - 3e+0 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative C.G. S.X.
0.04 5e+0 32 Oryza sativa Os.47571.1.A1_at - - - 0 C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.7960.1.S1_at CA642237 - - 3e-1 At3g60280 UCC3 (UCLACYANIN 3) C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1615274_at CF208682 hypothetical protein LOC100248855 - 1e-6 At1g53580 GLY3 (GLYOXALASE II 3) C.G. S.X.
0.05 1e+0 32 Zea mays Zm.12478.1.A1_at CF043347 - - 7e-2 At5g40630 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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