CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204430.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 67.0 PtpAffx.204430.1.S1_at pmrna8705 hypothetical protein - 2e-160 At3g44050 kinesin motor protein-related S.X. H.G.
0.73 93.6 PtpAffx.129961.1.S1_at CV226698 hypothetical protein - 8e-34 At3g25980 mitotic spindle checkpoint protein, putative (MAD2) S.X. H.G.
0.67 91.1 PtpAffx.127433.1.A1_at CV257930 cyclin b - 5e-3 At3g11520 CYCB1 S.X. H.G.
0.61 87.0 PtpAffx.18355.1.S1_at CV253470 hypothetical protein - 2e-1 At3g11520 CYCB1 S.X. H.G.
0.55 82.2 PtpAffx.56737.2.A1_a_at CX174790 hypothetical protein - 3e-41 At4g33260 CDC20.2 S.X. H.G.
0.50 78.6 Ptp.1602.1.S1_at AY307372.1 hypothetical protein - 8e-102 At1g20930 CDKB2 S.X. H.G.
0.50 78.6 PtpAffx.134612.1.A1_at CV229293 hypothetical protein - 9e-12 At2g30820 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.2 99.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.86 0 2329 PtpAffx.222445.1.S1_at pmrna39851 hypothetical protein - 2e-117 At3g44050 kinesin motor protein-related C.G. S.X.
0.06 1e-66 256 PtpAffx.57307.1.A1_at CV230955 - - 2e+0 At5g26930 zinc finger (GATA type) family protein C.G. S.X.
0.02 4e-5 52 PtpAffx.215796.1.S1_at pmrna30188 hypothetical protein - 5e-52 At3g19050 POK2 (PHRAGMOPLAST ORIENTING KINESIN 2) C.G. S.X.
0.01 3e-3 46 PtpAffx.206227.1.S1_at pmrna12360 hypothetical protein - 6e-68 At2g37420 kinesin motor protein-related C.G. S.X.
0.01 4e-2 42 PtpAffx.212911.1.S1_at pmrna25262 hypothetical protein - 4e-26 At3g48770 ATP binding / DNA binding C.G. S.X.
0.01 4e-2 42 PtpAffx.212911.1.S1_s_at pmrna25262 hypothetical protein - 4e-26 At3g48770 ATP binding / DNA binding C.G. S.X.
0.01 4e-2 42 PtpAffx.201858.1.S1_at pmrna3688 hypothetical protein - 6e-104 At1g21730 kinesin-related protein (MKRP1) C.G. S.X.
0.01 2e-1 40 PtpAffx.202625.1.S1_at pmrna5245 hypothetical protein - 4e-66 At3g23670 KINESIN-12B C.G. S.X.
0.01 2e-1 40 Ptp.2996.2.A1_at CV255177 hypothetical protein - 4e-10 At5g51680 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-160 567 Arabidopsis thaliana At3g44050 823523 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV - - - C.G. S.X.
0.01 2e-1 40 Glycine max GmaAffx.19789.1.A1_at BU547454 - - 9e-2 At2g24690 DNA binding / transcription factor C.G. S.X.
0.01 4e+0 34 Hordeum vulgare rbags16h12_s_at rbags16h12 - - 9e-1 At2g04066 MATE efflux protein-related C.G. S.X.
0.19 1e-33 147 Oryza sativa Os03g0750300 9631.m05296 - Hypothetical protein 2e-16 At3g44050 kinesin motor protein-related C.G. S.X.
0.01 5e-1 38 Triticum aestivum TaAffx.93272.1.S1_at BJ225734 - - 4e+0 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1618952_at CF405185 - - 7e-1 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
0.01 2e-1 38 Zea mays Zm.10807.1.S1_at AY106975.1 hypothetical protein LOC100280257 - 4e-19 At3g16060 kinesin motor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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