CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204233.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 88.6 PtpAffx.204233.1.S1_at pmrna8323 hypothetical protein - 2e-60 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative S.X. H.G.
0.32 55.2 PtpAffx.200675.1.S1_at pmrna1314 hypothetical protein - 1e-70 At5g22030 UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) S.X. H.G.
0.32 55.2 Ptp.78.3.A1_a_at CV259205 - - 9e-33 At1g30120 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) S.X. H.G.
0.27 47.1 Ptp.78.2.A1_at CV247656 - - 4e-50 At1g30120 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) S.X. H.G.
0.25 43.6 Ptp.2246.1.A1_at CK087617 - - 3e-73 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) S.X. H.G.
0.22 38.3 PtpAffx.205653.1.S1_at pmrna11162 hypothetical protein - 5e-178 At2g42880 ATMPK20 S.X. H.G.
0.16 26.9 PtpAffx.13741.1.A1_at CV260917 hypothetical protein - 9e-5 At4g13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative S.X. H.G.
0.14 23.5 Ptp.2664.1.A1_at CV243085 hypothetical protein - 1e-35 At3g49720 unknown protein S.X. H.G.
0.12 19.6 PtpAffx.216292.1.S1_at pmrna30971 hypothetical protein - 2e-131 At1g55690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein S.X. H.G.
0.12 19.6 PtpAffx.33308.1.S1_at DN486616 hypothetical protein - 5e-70 At2g25830 YebC-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1 96.8 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6 96.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8 94.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 4347 PtpAffx.204233.1.S1_s_at pmrna8323 hypothetical protein - 2e-60 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.43 0 1394 PtpAffx.50964.1.A1_at CV226760 hypothetical protein - 4e-8 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.51 0 1378 PtpAffx.152681.2.S1_s_at BU879545 hypothetical protein - 7e-52 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.55 0 1221 PtpAffx.141342.1.S1_at CN520445 hypothetical protein - 8e-37 At2g21520 transporter C.G. S.X.
0.47 0 920 PtpAffx.152681.1.S1_at CK107100 hypothetical protein - 7e-56 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.24 4e-81 303 PtpAffx.89272.1.A1_at CV231191 - - 1e+0 At4g27540 PRA1.H (PRENYLATED RAB ACCEPTOR 1.H) C.G. S.X.
0.18 6e-34 147 PtpAffx.225680.1.S1_at pmrna45207 hypothetical protein - 2e-103 At4g36490 SFH12 (SEC14-LIKE 12) C.G. S.X.
0.20 2e-33 145 PtpAffx.207383.1.S1_at pmrna14642 hypothetical protein - 6e-94 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.07 1e-16 89 PtpAffx.46673.2.S1_at CN523834 hypothetical protein - 2e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-60 234 Arabidopsis thaliana At4g39170 830072 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO - - - C.G. S.X.
0.40 9e-101 369 Glycine max Gma.5017.1.S1_at BI472180 - - 4e-42 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.09 2e-6 54 Hordeum vulgare Contig7871_s_at Contig7871 - - 1e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative C.G. S.X.
0.19 2e-9 65 Oryza sativa Os02g0133100 AK060180.1 - Phosphatidylinositol transfer-like protein III 1e-18 At2g21520 transporter C.G. S.X.
0.14 6e-18 93 Triticum aestivum Ta.9438.1.S1_at CA682696 - - 3e-7 At2g18180 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.52 2e-175 615 Vitis vinifera 1612370_at CB974818 hypothetical protein LOC100252199 - 1e-46 At4g39170 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.19 2e-25 117 Zea mays Zm.6096.2.S1_at AJ006545 - - 2e-26 At2g21520 transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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