CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.204185.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.204185.1.S1_at pmrna8238 hypothetical protein - 5e-5 At5g57570 - S.X. H.G.
0.24 41.8 PtpAffx.217157.1.S1_at pmrna32308 hypothetical protein - 4e+1 At5g57000 unknown protein S.X. H.G.
0.23 40.5 Ptp.1910.1.A1_at CK092152 - - 2e+0 At5g44430 PDF1.2c (plant defensin 1.2c) S.X. H.G.
0.23 40.5 PtpAffx.215743.1.S1_at pmrna30117 hypothetical protein - 3e-1 At2g44910 ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4) S.X. H.G.
0.21 36.5 PtpAffx.16325.1.A1_at DN490646 - - 3e+0 At4g29285 LCR24 (Low-molecular-weight cysteine-rich 24) S.X. H.G.
0.21 36.5 PtpAffx.205451.1.S1_at pmrna10781 - - 2e+0 At4g33600 unknown protein S.X. H.G.
0.19 32.7 Ptp.2282.3.A1_at CV238349 - - 2e-4 At1g30910 molybdenum cofactor sulfurase family protein S.X. H.G.
0.18 30.8 PtpAffx.216491.1.S1_at pmrna31280 hypothetical protein - 8e-27 At5g35560 DENN (AEX-3) domain-containing protein S.X. H.G.
0.18 30.8 PtpAffx.214120.1.S1_at pmrna27487 hypothetical protein - 7e-2 At3g49796 unknown protein S.X. H.G.
0.17 29.1 PtpAffx.209845.1.S1_at pmrna19409 hypothetical protein - 9e-1 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
13.1 99.4 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.3 98.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-34 147 PtpAffx.209933.1.S1_at pmrna19592 hypothetical protein - 7e-1 At5g57570 - C.G. S.X.
0.36 6e-33 141 PtpAffx.205425.1.S1_at pmrna10731 hypothetical protein - 3e-3 At5g46030 unknown protein C.G. S.X.
0.38 1e-30 133 PtpAffx.223811.1.S1_at pmrna42011 hypothetical protein - 2e-1 At1g12665 - C.G. S.X.
0.22 8e-20 97 PtpAffx.213170.1.S1_at pmrna25763 hypothetical protein - 8e-2 At1g35900 unknown protein C.G. S.X.
0.25 8e-17 87 PtpAffx.213597.1.S1_at pmrna26554 hypothetical protein - 1e-2 At5g10910 mraW methylase family protein C.G. S.X.
0.05 1e-6 54 PtpAffx.223818.1.S1_at pmrna42020 hypothetical protein - 2e+0 At3g17170 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) C.G. S.X.
0.02 2e-5 50 PtpAffx.203105.1.S1_at pmrna6150 hypothetical protein - 4e-3 At2g35540 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 1e-3 44 PtpAffx.216095.1.S1_at pmrna30668 hypothetical protein - 0 At5g54260 MRE11 (meiotic recombination 11) C.G. S.X.
0.02 1e-3 44 PtpAffx.213898.1.S1_at pmrna27100 hypothetical protein - 2e-11 At5g39970 catalytic C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-5 48 Arabidopsis thaliana At5g57570 835861 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO - - - C.G. S.X.
0.05 2e-2 40 Glycine max GmaAffx.8146.1.A1_at BE661764 - - 2e-1 At5g64330 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) C.G. S.X.
0.07 2e-2 38 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 4e-4 46 Oryza sativa Os.16323.3.A1_at - - - 0 C.G. S.X.
0.05 3e-3 42 Triticum aestivum TaAffx.30669.1.S1_at CA623042 - - 1e+0 At1g63057 unknown protein C.G. S.X.
0.05 2e-1 34 Vitis vinifera 1620915_at CF511488 - - 2e-1 At2g17740 DC1 domain-containing protein C.G. S.X.
0.05 1e+0 32 Zea mays Zm.9557.1.A1_at BI423687 Glycine cleavage H-protein - 2e-2 At1g32470 glycine cleavage system H protein, mitochondrial, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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