Gene omics information

Query gene ID PtpAffx.203973.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9PtpAffx.203973.1.S1_atpmrna7836hypothetical protein-4e-41At3g03380DegP7 (DegP protease 7)S.X.H.G.
0.6791.1PtpAffx.224250.1.S1_atpmrna42635hypothetical protein-1e-12At1g01340ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)S.X.H.G.
0.5582.2PtpAffx.1195.1.S1_atCV240980hypothetical protein-5e-1At1g4883040S ribosomal protein S7 (RPS7A)S.X.H.G.
0.5582.2PtpAffx.224876.1.S1_atpmrna43777hypothetical protein-3e-25At5g53130CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)S.X.H.G.
0.4067.0PtpAffx.161349.1.S1_s_atDN498837hypothetical protein-5e+0At4g14520DNA-directed RNA polymerase II-relatedS.X.H.G.
0.1729.1PtpAffx.139482.1.S1_atCX182517hypothetical protein-1e-37At4g23010UDP-galactose transporter-relatedS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.299.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.497.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.796.3GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.694.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.293.5GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.992.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-65252PtpAffx.57805.1.S1_atCK093083hypothetical protein-9e-21At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.223e-64248PtpAffx.34591.1.S1_s_atCV283632hypothetical protein-4e-39At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.051e-863PtpAffx.3391.1.S1_atDN492725hypothetical protein-8e-19At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.014e-552PtpAffx.13802.1.S1_atCK091170--4e+0At5g12390FIS1B (FISSION 1B)C.G.S.X.
0.016e-138PtpAffx.221966.1.S1_atpmrna39104hypothetical protein-2e-13At2g16660nodulin family proteinC.G.S.X.
0.016e-138PtpAffx.209028.1.S1_atpmrna17878hypothetical protein-8e-1At1g72260THI2.1 (THIONIN 2.1)C.G.S.X.
0.016e-138Ptp.117.1.S1_atAY307373.1transcription factor DP, E2 dimerization partner protein /// transcription factor DP, E2 dimerization partner protein-8e-38At5g03415DPBC.G.S.X.
0.012e+036PtpAffx.82845.1.S1_atCV229296--2e+0At5g18150unknown proteinC.G.S.X.
0.012e+036PtpAffx.223391.1.S1_s_atpmrna41369--6e-16At4g21100DDB1B (Damaged DNA Binding Protein 1 B)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.224e-41171Arabidopsis thalianaAt3g03380821268DegP7 (DegP protease 7)Encodes a putative DegP protease.---C.G.S.X.
0.233e-30135Glycine maxGma.8288.1.S1_atBU550070--6e-29At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.058e-446Hordeum vulgareContig7623_atContig7623--3e-14At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.058e-448Oryza sativaOs02g0712000AK065045.1-PDZ/DHR/GLGF domain containing protein1e-10At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.012e+036Triticum aestivumTa.8245.3.S1_atCA661439--1e+0At2g32360ubiquitin family proteinC.G.S.X.
0.343e-64246Vitis vinifera1610831_atCB976031hypothetical protein LOC100255257-4e-89At3g03380DegP7 (DegP protease 7)C.G.S.X.
0.012e-138Zea maysZm.6511.1.A1_atAI691925--9e-1At1g49940-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage