Gene omics information

Query gene ID	PtpAffx.203973.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.203973.1.S1_at	pmrna7836	hypothetical protein	-	4e-41	At3g03380	DegP7 (DegP protease 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.224250.1.S1_at	pmrna42635	hypothetical protein	-	1e-12	At1g01340	ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.1195.1.S1_at	CV240980	hypothetical protein	-	5e-1	At1g48830	40S ribosomal protein S7 (RPS7A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.224876.1.S1_at	pmrna43777	hypothetical protein	-	3e-25	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.161349.1.S1_s_at	DN498837	hypothetical protein	-	5e+0	At4g14520	DNA-directed RNA polymerase II-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.139482.1.S1_at	CX182517	hypothetical protein	-	1e-37	At4g23010	UDP-galactose transporter-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.4	97.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7	96.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6	94.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-65	252	PtpAffx.57805.1.S1_at	CK093083	hypothetical protein	-	9e-21	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	3e-64	248	PtpAffx.34591.1.S1_s_at	CV283632	hypothetical protein	-	4e-39	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-8	63	PtpAffx.3391.1.S1_at	DN492725	hypothetical protein	-	8e-19	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-5	52	PtpAffx.13802.1.S1_at	CK091170	-	-	4e+0	At5g12390	FIS1B (FISSION 1B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	38	PtpAffx.221966.1.S1_at	pmrna39104	hypothetical protein	-	2e-13	At2g16660	nodulin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	38	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	38	Ptp.117.1.S1_at	AY307373.1	transcription factor DP, E2 dimerization partner protein /// transcription factor DP, E2 dimerization partner protein	-	8e-38	At5g03415	DPB	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.82845.1.S1_at	CV229296	-	-	2e+0	At5g18150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.223391.1.S1_s_at	pmrna41369	-	-	6e-16	At4g21100	DDB1B (Damaged DNA Binding Protein 1 B)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-41	171	Arabidopsis thaliana	At3g03380	821268	DegP7 (DegP protease 7)	Encodes a putative DegP protease.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	3e-30	135	Glycine max	Gma.8288.1.S1_at	BU550070	-	-	6e-29	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please select
0.05	8e-4	46	Hordeum vulgare	Contig7623_at	Contig7623	-	-	3e-14	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please select
0.05	8e-4	48	Oryza sativa	Os02g0712000	AK065045.1	-	PDZ/DHR/GLGF domain containing protein	1e-10	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	2e+0	36	Triticum aestivum	Ta.8245.3.S1_at	CA661439	-	-	1e+0	At2g32360	ubiquitin family protein	C.G.	S.X.	Please select
0.34	3e-64	246	Vitis vinifera	1610831_at	CB976031	hypothetical protein LOC100255257	-	4e-89	At3g03380	DegP7 (DegP protease 7)	C.G.	S.X.	Please select
0.01	2e-1	38	Zea mays	Zm.6511.1.A1_at	AI691925	-	-	9e-1	At1g49940	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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