Gene omics information

Query gene ID	PtpAffx.203818.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	97.2	PtpAffx.203818.1.S1_x_at	pmrna7547	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.213950.1.S1_at	pmrna27193	hypothetical protein	-	5e-4	At5g15280	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.218536.1.S1_s_at	pmrna34192	hypothetical protein	-	7e-1	At2g19700	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.11566.1.A1_at	CV260969	hypothetical protein	-	4e+0	At5g54190	PORA	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.24905.1.S1_a_at	CV241886	hypothetical protein	-	6e-1	At1g67710	ARR11 (RESPONSE REGULATOR 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.81831.1.S1_at	CV271583	hypothetical protein	-	3e-2	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.11488.1.S1_at	CV244200	hypothetical protein	-	6e-49	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.2405.1.S1_at	CK090525	hypothetical protein	-	2e-17	At5g42370	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.1651.1.A1_at	CV248691	hypothetical protein	-	7e-9	At2g19430	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.1082.1.A1_a_at	BI122772	hypothetical protein	-	2e-28	At2g01060	myb family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-71	268	PtpAffx.210340.1.S1_at	pmrna20334	hypothetical protein	-	7e-3	At5g37550	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	6e-44	176	PtpAffx.213400.1.S1_at	pmrna26216	hypothetical protein	-	2e+0	Atmg00600	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	34	PtpAffx.91803.1.S1_at	DN500898	hypothetical protein	-	2e-18	At4g36195	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-1	34	PtpAffx.6955.4.S1_a_at	DN491993	hypothetical protein	-	1e+0	At5g39700	MYB89 (myb domain protein 89)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	34	PtpAffx.213330.1.S1_at	pmrna26074	hypothetical protein	-	1e-84	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	34	PtpAffx.207239.1.S1_at	pmrna14350	hypothetical protein	-	6e-17	At1g16650	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	34	Ptp.7275.1.S1_s_at	BU898216	hypothetical protein	-	2e-78	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	34	Ptp.5927.1.S1_s_at	CX180888	hypothetical protein	-	2e-113	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.37257.1.A1_at	CV259058	hypothetical protein	-	1e-7	At1g22160	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-2	38	Arabidopsis thaliana	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-1	34	Glycine max	Gma.12086.1.S1_at	BG508269	-	-	4e-2	At5g06230	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Hordeum vulgare	Contig22777_at	Contig22777	-	-	1e-2	At1g78710	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	Oryza sativa	Os02g0618600	9630.m03917	-	-	4e+0	At4g07526	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e+0	32	Triticum aestivum	TaAffx.107673.1.S1_at	CA696851	-	-	3e-1	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.05	1e-1	34	Vitis vinifera	1610253_at	CF405887	-	-	2e-1	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	Zm.8970.1.A1_at	CO527395	hypothetical protein LOC100193936	-	5e-1	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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