CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203780.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.203780.1.S1_at pmrna7465 hypothetical protein - 1e-4 At3g09020 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein S.X. H.G.
0.67 91.1 PtpAffx.158656.2.S1_at CX654035 hypothetical protein - 1e-4 At3g08030 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.224333.1.S1_x_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) S.X. H.G.
0.50 78.6 PtpAffx.224333.1.S1_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) S.X. H.G.
0.46 73.7 Ptp.325.1.A1_s_at CK088352 cytochrome P450 - 7e-3 At1g01190 CYP78A8 S.X. H.G.
0.21 36.5 PtpAffx.54756.1.S1_at BU830852 hypothetical protein - 2e-1 At1g76070 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.3 99.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.0 98.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.3 98.2 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.3 97.7 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1146 PtpAffx.209698.1.S1_at pmrna19141 hypothetical protein - 1e-1 At3g09020 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein C.G. S.X.
0.03 6e-4 46 PtpAffx.22865.1.S1_at DN484594 hypothetical protein - 3e-5 At3g09020 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein C.G. S.X.
0.02 4e-2 40 PtpAffx.162745.1.S1_at BU827623 hypothetical protein - 1e-53 At2g33150 PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3) C.G. S.X.
0.02 2e-1 38 PtpAffx.212741.1.S1_at pmrna24923 hypothetical protein - 8e-16 At1g74830 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.9875.1.S1_at DN495813 - - 3e+0 At3g10980 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.68533.1.S1_at CV272960 - - 2e-3 At3g56680 nucleic acid binding C.G. S.X.
0.02 2e+0 34 PtpAffx.61043.1.S1_at DN487904 - - 6e+0 At3g16990 TENA/THI-4 family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.4733.7.S1_s_at DN483735 hypothetical protein - 7e-37 At1g66200 ATGSR2 C.G. S.X.
0.02 2e+0 34 PtpAffx.222696.1.S1_at pmrna40265 hypothetical protein - 4e+0 At5g61640 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-4 48 Arabidopsis thaliana At3g09020 820054 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOB - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.56272.1.S1_at BU761188 - - 4e+0 At5g57570 - C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HVSMEb0011B15r2_at HVSMEb0011B15r2 - - 4e+0 At5g42670 agenet domain-containing protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os08g0158600 NM_189050.1 - Conserved hypothetical protein 3e+0 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.24489.1.S1_at CA682325 - - 2e+0 At5g09800 U-box domain-containing protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617107_at CD712747 - - 4e-1 At4g01735 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9848.1.A1_at BM341075 - - 1e+0 At5g23640 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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