Gene omics information

Query gene ID	PtpAffx.203676.1.S1_at
Gene name	calcium dependent protein kinase 15
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.203676.1.S1_at	pmrna7282	calcium dependent protein kinase 15	-	1e-51	At4g04720	CPK21	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.209161.1.S1_x_at	pmrna18133	hypothetical protein	-	1e-8	At1g14170	KH domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.3227.1.S1_s_at	BU816637	hypothetical protein	-	2e-36	At2g38130	ATMAK3	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.4020.2.S1_s_at	CX659915	hypothetical protein	-	9e-39	At1g31780	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.5762.1.S1_at	AJ777748	ebs-bah-phd domain-containing protein	-	2e-46	At4g22140	DNA binding / protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.211375.1.S1_s_at	pmrna22296	hypothetical protein	-	4e-9	At2g42520	DEAD box RNA helicase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.209161.1.S1_at	pmrna18133	hypothetical protein	-	1e-8	At1g14170	KH domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	94.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-126	454	PtpAffx.52589.1.S1_at	CA825630	calcium dependent protein kinase 21	-	5e-31	At4g21940	CPK15	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-106	387	PtpAffx.157820.1.S1_s_at	DN497297	calcium dependent protein kinase 15	-	9e-2	At4g04720	CPK21	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	4e-12	73	PtpAffx.200887.1.S1_s_at	pmrna1743	calcium dependent protein kinase 17 /// calcium dependent protein kinase 25	-	4e-104	At5g12180	CPK17	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-10	67	PtpAffx.206966.1.S1_at	pmrna13809	calcium dependent protein kinase 24	-	1e-27	At2g31500	CPK24	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-9	65	PtpAffx.5895.1.S1_at	CV230287	calcium dependent protein kinase 22 /// calcium dependent protein kinase 3	-	8e-24	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-7	57	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-6	56	PtpAffx.212379.1.S1_at	pmrna24257	calcium dependent protein kinase 11	-	2e-63	At4g09570	CPK4	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-6	56	PtpAffx.13635.1.A1_at	CK097331	calcium dependent protein kinase 3	-	7e-3	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-6	54	PtpAffx.209506.1.S1_at	pmrna18836	calcium dependent protein kinase 1	-	2e-63	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	1e-51	204	Arabidopsis thaliana	At4g04720	825807	CPK21	member of Calcium Dependent Protein Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	5e-55	216	Glycine max	Gma.8111.1.S1_at	U69174.1	calmodulin-like domain protein kinase isoenzyme gamma	-	3e-57	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.35	2e-33	143	Hordeum vulgare	Contig5679_at	Contig5679	-	-	7e-42	At4g21940	CPK15	C.G.	S.X.	Please select
0.36	4e-53	210	Oryza sativa	Os07g0515100	AK074028.1	-	Calcium-dependent protein kinase, isoform 2 (EC2.7.1.-) (CDPK 2)	2e-32	At1g50700	CPK33	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-17	89	Triticum aestivum	Ta.2423.1.S1_at	BT009467.1	Calcium-dependent protein kinase	-	3e-23	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.22	9e-44	176	Vitis vinifera	1610931_at	CF206616.1	-	-	2e-9	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select
0.27	1e-21	103	Zea mays	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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