CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203617.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.203617.1.S1_at pmrna7167 hypothetical protein - 1e-7 At3g13480 unknown protein S.X. H.G.
0.46 73.7 PtpAffx.4868.3.S1_a_at CV266607 f-box family protein - 3e-1 At1g55000 peptidoglycan-binding LysM domain-containing protein S.X. H.G.
0.44 71.9 PtpAffx.135298.1.A1_at CV232578 hypothetical protein - 1e+0 At1g16490 MYB58 (MYB DOMAIN PROTEIN 58) S.X. H.G.
0.43 69.7 PtpAffx.73309.1.S1_a_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase S.X. H.G.
0.19 32.7 PtpAffx.4328.1.S1_a_at CX180970 hypothetical protein - 1e-5 At1g56700 pyrrolidone-carboxylate peptidase family protein S.X. H.G.
0.18 30.8 PtpAffx.127528.1.A1_s_at CV255049 hypothetical protein - 1e-10 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.0 99.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
12.6 99.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5 94.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 4e-125 448 PtpAffx.200017.1.S1_s_at pmrna26 hypothetical protein - 1e-5 At3g13480 unknown protein C.G. S.X.
0.02 4e-2 40 PtpAffx.210995.1.S1_at pmrna21598 - - 1e-2 At3g04750 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 1e-1 38 PtpAffx.200406.1.S1_at pmrna814 hypothetical protein - 1e-8 At1g63930 unknown protein C.G. S.X.
0.03 6e-1 36 PtpAffx.69294.1.A1_at CV270589 hypothetical protein - 8e-5 At1g55140 RNA binding / ribonuclease III C.G. S.X.
0.02 6e-1 36 PtpAffx.56650.1.A1_s_at CA823086 cytochrome P450 - 3e-2 At5g36220 CYP81D1 (CYTOCHROME P450 81D1) C.G. S.X.
0.02 6e-1 36 PtpAffx.35286.1.S1_at CN550224 hypothetical protein - 3e-39 At4g39080 VHA-A3 (VACUOLAR PROTON ATPASE A3) C.G. S.X.
0.01 6e-1 36 PtpAffx.216309.1.S1_at pmrna31006 hypothetical protein - 3e-17 At4g26540 kinase C.G. S.X.
0.02 6e-1 36 PtpAffx.215757.1.S1_s_at pmrna30137 ABC transporter family protein /// ABC transporter family protein /// ABC transporter family protein - 1e-27 At5g39040 ATTAP2 C.G. S.X.
0.02 6e-1 36 PtpAffx.189.1.S1_at DN487914 - - 2e+0 At1g24450 NFD2 (NUCLEAR FUSION DEFECTIVE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-7 57 Arabidopsis thaliana At3g13480 820550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO - - - C.G. S.X.
0.03 6e-1 36 Glycine max GmaAffx.76417.1.S1_at BE609069 - - 4e+0 At5g56430 F-box family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HW09O19u_x_at HW09O19u - - 5e+0 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.28327.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.107759.1.S1_at CA695749 - - 4e+0 At2g29045 LCR62 (Low-molecular-weight cysteine-rich 62) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1616105_at CA809406 hypothetical protein LOC100266507 - 6e-2 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.525.1.A1_at AI711680 - - 8e-1 At5g23170 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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