Gene omics information

Query gene ID	PtpAffx.203561.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.216835.1.S1_at	pmrna31873	hypothetical protein	-	3e-9	At5g55570	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.127968.1.A1_at	CV237300	hypothetical protein	-	1e-1	At5g26622	beta-galactosidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.70645.1.S1_at	CV280156	cinnamyl alcohol dehydrogenase-like protein /// cinnamyl alcohol dehydrogenase-like protein	-	3e-6	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.201977.1.S1_at	pmrna3949	hypothetical protein	-	7e-1	At1g05450	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.56585.1.S1_at	CV259403	hypothetical protein	-	9e-1	At3g57072	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.209092.1.S1_at	pmrna17982	hypothetical protein	-	7e-1	At3g54940	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.249.682.A1_at	CV262269	hypothetical protein	-	2e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.120741.1.A1_at	CV267327	hypothetical protein	-	3e-5	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	99.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.4	99.2	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.1	99.1	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.5	98.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.5	98.3	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.5	97.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	2e-133	476	PtpAffx.134127.1.A1_at	CV247399	hypothetical protein	-	2e-12	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-13	77	PtpAffx.203559.1.S1_at	pmrna7067	hypothetical protein	-	4e-3	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	6e-10	65	PtpAffx.47094.1.A1_at	CV255676	hypothetical protein	-	4e+0	At2g01770	VIT1 (vacuolar iron transporter 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.203822.1.S1_at	pmrna7553	hypothetical protein	-	2e+0	At2g44050	COS1 (COI1 SUPPRESSOR1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.202162.1.S1_at	pmrna4328	hypothetical protein	-	5e-43	At2g45420	LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.201637.1.S1_at	pmrna3241	hypothetical protein	-	2e-15	At1g44970	peroxidase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.217374.1.S1_at	pmrna32605	hypothetical protein	-	3e-1	At4g36420	ribosomal protein L12 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.215955.1.S1_at	pmrna30438	hypothetical protein	-	3e-15	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.211544.1.S1_at	pmrna22624	hypothetical protein	-	5e-1	At3g61390	U-box domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-21	103	Arabidopsis thaliana	At3g27890	822411	NQR (NADPH:QUINONE OXIDOREDUCTASE)	Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	2e-16	87	Glycine max	GmaAffx.90444.1.S1_s_at	CF806169	-	-	1e-24	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select
0.11	2e-4	46	Hordeum vulgare	Contig18638_at	Contig18638	-	-	1e-12	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select
0.09	8e-1	36	Oryza sativa	Os01g0954000	AK062729.1	-	NADPH-dependent FMN reductase family protein	2e+0	At4g23690	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-4	48	Triticum aestivum	Ta.16958.2.S1_a_at	CA602134	-	-	5e-9	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621834_at	BQ794561	hypothetical protein LOC100254175	-	2e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select
0.04	7e-1	34	Zea mays	Zm.13727.1.A1_at	CK986131	NADPH quinone oxidoreductase 1	-	2e-6	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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