CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203436.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.203436.1.S1_at pmrna6850 hypothetical protein - 3e+0 At2g28710 zinc finger (C2H2 type) family protein S.X. H.G.
0.46 73.7 Ptp.7035.1.S1_at CV253765 hypothetical protein - 1e-25 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.29 50.5 PtpAffx.52144.1.S1_at CV235587 - - 1e-11 At2g38740 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.25 43.6 PtpAffx.224739.1.S1_at pmrna43556 hypothetical protein - 1e-15 At5g45650 subtilase family protein S.X. H.G.
0.07 11.6 PtpAffx.128139.1.A1_at CV262185 hypothetical protein - 3e-14 At5g63905 unknown protein S.X. H.G.
0.06 9.8 PtpAffx.50248.1.S1_s_at DN500676 hypothetical protein - 5e-1 At5g48515 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.6 99.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
15.4 99.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.6 99.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.8 99.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.7 69.4 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.7 69.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-2 38 PtpAffx.7161.1.S1_at CK097585 hypothetical protein - 5e-65 At2g18390 TTN5 (TITAN 5) C.G. S.X.
0.04 2e-1 36 PtpAffx.56617.1.A1_at CV258283 - - 1e-19 At4g30190 AHA2 C.G. S.X.
0.02 2e-1 36 PtpAffx.203579.1.S1_at pmrna7109 hypothetical protein - 1e-15 At1g11290 CRR22 (CHLORORESPIRATORY REDUCTION22) C.G. S.X.
0.04 9e-1 34 PtpAffx.450.6.S1_a_at CN519032 hypothetical protein - 6e-58 At5g50850 MAB1 (MACCI-BOU) C.G. S.X.
0.03 9e-1 34 PtpAffx.213765.1.S1_at pmrna26876 hypothetical protein - 2e+0 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.03 9e-1 34 Ptp.7199.1.S1_s_at CX654989 hypothetical protein - 2e-46 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.03 9e-1 34 Ptp.7199.2.A1_s_at CV256741 hypothetical protein - 5e-47 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.03 9e-1 34 Ptp.6616.1.S1_a_at CV278062 hypothetical protein - 2e-46 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
0.03 9e-1 34 Ptp.6616.1.S1_at CV278062 hypothetical protein - 2e-46 At3g13120 30S ribosomal protein S10, chloroplast, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At2g28710 817420 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO - - - C.G. S.X.
0.05 9e-1 34 Glycine max HgAffx.3870.1.A1_at CK348820 - - 8e-1 At1g14290 SBH2 (SPHINGOID BASE HYDROXYLASE 2) C.G. S.X.
0.04 5e+0 30 Hordeum vulgare EBma01_SQ001_B22_at EBma01_SQ001_B22 - - 2e-1 At3g46560 TIM9 C.G. S.X.
0.07 1e+0 34 Oryza sativa Os.16254.1.S1_at - - - 0 C.G. S.X.
0.09 7e-1 34 Triticum aestivum Ta.19406.1.S1_at CA651314 - - 2e-1 At5g38060 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1612999_at CF513786 hypothetical protein LOC100261952 - 4e+0 At2g15590 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.17595.2.S1_at AI670297 - - 8e-1 At4g17530 ATRAB1C C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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