Gene omics information

Query gene ID	PtpAffx.203422.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.203422.1.S1_at	pmrna6819	hypothetical protein	-	5e-9	At5g37380	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.512.1.A1_at	CX184282	hypothetical protein	-	2e+0	At5g28610	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.122044.1.S1_s_at	DN498283	hypothetical protein	-	5e-47	At4g19190	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.125795.1.A1_s_at	CV237305	hypothetical protein	-	7e-3	At4g25500	ATRSP35	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.207472.1.S1_at	pmrna14832	hypothetical protein	-	1e-2	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.155333.1.S1_s_at	AI164213	hypothetical protein	-	7e-17	At4g04920	SFR6 (SENSITIVE TO FREEZING 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.17053.1.A1_s_at	CX180929	hypothetical protein	-	1e-72	At1g55150	DEAD box RNA helicase, putative (RH20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.45	72.3	Ptp.5783.1.S1_at	DN488276	-	-	5e-13	At3g10030	aspartate/glutamate/uridylate kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.204428.1.S1_x_at	pmrna8703	hypothetical protein	-	2e-11	At5g12230	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.24872.1.A1_at	CV242999	hypothetical protein	-	7e-33	At3g24200	FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
15.4	99.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.9	99.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.4	82.3	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	4032	PtpAffx.203422.1.S1_s_at	pmrna6819	hypothetical protein	-	5e-9	At5g37380	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.87	0	1088	PtpAffx.200231.1.S1_at	pmrna440	hypothetical protein	-	3e-7	At5g37380	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	1e-25	119	PtpAffx.212880.1.S1_at	pmrna25208	hypothetical protein	-	6e-2	At5g37380	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-21	105	PtpAffx.210654.1.S1_at	pmrna20897	hypothetical protein	-	2e-2	At5g50115	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-9	65	PtpAffx.82206.1.A1_at	CV256123	hypothetical protein	-	9e-3	At5g53150	heat shock protein binding / unfolded protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	4e-7	57	PtpAffx.216618.1.S1_s_at	pmrna31521	hypothetical protein	-	1e+0	At5g50510	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	42	PtpAffx.208570.1.S1_at	pmrna16993	hypothetical protein	-	2e-5	At5g18750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	40	PtpAffx.218013.1.S1_at	pmrna33509	hypothetical protein	-	1e-5	At5g18750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	9e-2	40	PtpAffx.211917.1.S1_at	pmrna23407	hypothetical protein	-	3e-32	At2g05230	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-9	63	Arabidopsis thaliana	At5g37380	833712	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	3e-20	101	Glycine max	GmaAffx.66037.1.S1_at	BU544851	-	-	5e-1	At2g25210	60S ribosomal protein L39 (RPL39A)	C.G.	S.X.	Please select
0.06	5e-4	46	Hordeum vulgare	Contig8945_at	Contig8945	-	-	7e-1	At4g11250	AGL52	C.G.	S.X.	Please select
0.07	1e-4	50	Oryza sativa	Os04g0388800	AK063403.1	-	Conserved hypothetical protein	5e-3	At3g10760	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	36	Triticum aestivum	Ta.10227.1.S1_at	CK208244	-	-	1e+0	At3g02560	40S ribosomal protein S7 (RPS7B)	C.G.	S.X.	Please select
0.05	1e-9	63	Vitis vinifera	1619332_at	CF202464.1	hypothetical protein LOC100257476	-	1e+0	Atmg00450	-	C.G.	S.X.	Please select
0.03	3e-2	40	Zea mays	Zm.5686.1.A1_at	AI629946	-	-	1e+0	At2g17380	AP19	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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