Gene omics information

Query gene ID	PtpAffx.203390.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.203390.1.S1_at	pmrna6745	hypothetical protein	-	3e-20	At2g33550	gt-2-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.151954.3.S1_at	CX186472	hypothetical protein	-	7e-33	At3g58180	PBS lyase HEAT-like repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.151954.1.S1_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.34173.1.S1_at	CV227862	hypothetical protein	-	2e+0	At3g15358	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.13452.1.S1_at	CV235856	hypothetical protein	-	2e-6	At5g63910	FCLY (FARNESYLCYSTEINE LYASE)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
14.2	99.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
13.9	99.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
12.0	99.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.3	98.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.3	98.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.9	97.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	6e-152	537	PtpAffx.107697.1.A1_at	CV270487	-	-	4e-1	At1g76560	CP12-3	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	7e-84	311	Ptp.7443.1.S1_at	DN495215	hypothetical protein	-	6e+0	At5g36659	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	38	PtpAffx.220585.1.S1_at	pmrna36990	hypothetical protein	-	8e-15	At5g53450	ORG1 (OBP3-responsive gene 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.212605.1.S1_at	pmrna24682	hypothetical protein	-	2e-31	At5g53450	ORG1 (OBP3-responsive gene 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.141271.1.A1_at	CV225946	hypothetical protein	-	4e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.33712.1.S1_at	DN492954	hypothetical protein	-	2e+0	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.24082.2.S1_at	CV276187	-	-	1e+0	At2g44790	UCC2 (UCLACYANIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.221089.1.S1_at	pmrna37678	hypothetical protein	-	1e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.216534.1.S1_at	pmrna31370	white-brown-complex ABC transporter family	-	2e-20	At1g53270	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-20	99	Arabidopsis thaliana	At2g33550	817920	gt-2-related	F:transcription factor activity;P:regulation of transcription;C:unknown;POMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-19	97	Glycine max	GmaAffx.77633.1.S1_at	BI699475	-	-	1e-18	At2g33550	gt-2-related	C.G.	S.X.	Please select
0.02	8e-1	34	Hordeum vulgare	HD04M06r_at	HD04M06r	-	-	2e-2	At2g47570	60S ribosomal protein L18 (RPL18A)	C.G.	S.X.	Please select
0.04	3e-3	44	Oryza sativa	Os04g0397500	AU174699	-	Myb, DNA-binding domain containing protein	2e-1	At2g25670	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.87286.1.S1_at	CA592937	-	-	1e-1	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select
0.19	4e-20	97	Vitis vinifera	1620497_at	CD711513	-	-	1e-1	At1g48610	AT hook motif-containing protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	ZmAffx.1026.1.S1_at	AI881620	Hypothetical protein LOC100193718	-	8e-1	At1g55660	F-box family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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