Gene omics information

Query gene ID PtpAffx.203341.1.S1_s_at
Gene name AP2/ERF domain-containing transcription factor
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5279.4PtpAffx.203341.1.S1_s_atpmrna6649AP2/ERF domain-containing transcription factor-3e-7At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)S.X.H.G.
0.5480.8Ptp.3127.1.S1_s_atAJ777838hypothetical protein-3e-52At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)S.X.H.G.
0.4471.9PtpAffx.5219.1.A1_s_atCN523722hypothetical protein-5e-13At4g29220PFK1 (PHOSPHOFRUCTOKINASE 1)S.X.H.G.
0.4268.6PtpAffx.35909.1.S1_atCV244075hypothetical protein-3e-2At3g55970oxidoreductase, 2OG-Fe(II) oxygenase family proteinS.X.H.G.
0.4268.6PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinS.X.H.G.
0.4067.0PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)S.X.H.G.
0.4067.0PtpAffx.218771.1.S1_s_atpmrna34498jumonji domain protein /// hypothetical protein-5e-26At1g30810transcription factorS.X.H.G.
0.2747.1PtpAffx.85773.1.S1_atCK107579white-brown-complex ABC transporter family-6e-17At1g53390ATPase, coupled to transmembrane movement of substancesS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.999.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
12.999.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
12.099.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.995.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.193.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.463e-97355PtpAffx.590.1.S1_atCV240499AP2/ERF domain-containing transcription factor-6e-4At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
0.153e-1169PtpAffx.221100.1.S1_atpmrna37697AP2/ERF domain-containing transcription factor-9e-20At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)C.G.S.X.
0.161e-757PtpAffx.221102.1.S1_atpmrna37699AP2/ERF domain-containing transcription factor-2e-1At3g23230ethylene-responsive factor, putativeC.G.S.X.
0.102e-654PtpAffx.152047.1.S1_s_atBU862560AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-2e-12At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
0.077e-652PtpAffx.1161.1.A1_atCV242557AP2/ERF domain-containing transcription factor-4e-1At1g28160ethylene-responsive element-binding family proteinC.G.S.X.
0.043e-550PtpAffx.80967.1.S1_atCV257216AP2/ERF domain-containing transcription factor-2e-16At5g61890AP2 domain-containing transcription factor family proteinC.G.S.X.
0.111e-448PtpAffx.221103.1.S1_atpmrna37700--7e-5At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)C.G.S.X.
0.121e-448PtpAffx.221101.1.S1_atpmrna37698AP2/ERF domain-containing transcription factor-6e-12At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)C.G.S.X.
0.046e-342PtpAffx.35739.1.S1_atBP934264AP2/ERF domain-containing transcription factor-1e-14At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.183e-756Arabidopsis thalianaAt5g47220834768ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.---C.G.S.X.
0.072e-344Glycine maxGma.15943.2.S1_atBE057404--2e-5At2g33710AP2 domain-containing transcription factor family proteinC.G.S.X.
0.042e+032Hordeum vulgareEBpi01_SQ002_P23_atEBpi01_SQ002_P23--2e-1At4g15650protein kinase-relatedC.G.S.X.
0.049e-342Oryza sativaOs02g0654700AK073812.1-Ethylene-responsive element binding protein3e-3At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)C.G.S.X.
0.061e+034Triticum aestivumTaAffx.104796.1.S1_x_atCA744716--3e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeC.G.S.X.
0.045e-340Vitis vinifera1609629_atCF606022hypothetical protein LOC100250476-3e-17At5g13330Rap2.6L (related to AP2 6L)C.G.S.X.
0.032e+032Zea maysZm.4692.1.A1_atAI738236--1e+0At1g63470DNA-binding family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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