CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203259.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.203259.1.S1_s_at pmrna6453 hypothetical protein - 0 At4g11380 beta-adaptin, putative S.X. H.G.
0.55 82.2 Ptp.1377.1.S1_at CV260575 hypothetical protein - 5e-14 At1g77510 ATPDIL1-2 (PDI-LIKE 1-2) S.X. H.G.
0.44 71.9 Ptp.1377.1.S1_x_at CV260575 hypothetical protein - 5e-14 At1g77510 ATPDIL1-2 (PDI-LIKE 1-2) S.X. H.G.
0.29 50.5 PtpAffx.58214.1.S1_at DN503460 hypothetical protein - 2e-8 At3g52200 LTA3 S.X. H.G.
0.20 34.6 PtpAffx.211114.1.S1_at pmrna21834 hypothetical protein - 5e-23 At5g17910 unknown protein S.X. H.G.
0.16 26.9 PtpAffx.772.1.A1_s_at CV241979 hypothetical protein - 4e-26 At5g57020 NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 98.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1 95.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9 92.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 3957 PtpAffx.200412.1.S1_at pmrna830 hypothetical protein - 0 At4g11380 beta-adaptin, putative C.G. S.X.
0.91 0 3957 PtpAffx.200412.1.S1_x_at pmrna830 hypothetical protein - 0 At4g11380 beta-adaptin, putative C.G. S.X.
0.44 0 1160 PtpAffx.117024.1.S1_s_at CX168412 hypothetical protein - 7e-77 At4g11380 beta-adaptin, putative C.G. S.X.
0.28 6e-164 579 PtpAffx.20086.1.A1_at CV237398 - - 3e-2 At4g23460 beta-adaptin, putative C.G. S.X.
0.28 5e-143 510 Ptp.6194.1.S1_s_at CV237837 hypothetical protein - 2e-11 At4g11380 beta-adaptin, putative C.G. S.X.
0.28 5e-143 510 Ptp.6194.1.S1_at CV237837 hypothetical protein - 2e-11 At4g11380 beta-adaptin, putative C.G. S.X.
0.18 2e-49 198 PtpAffx.7623.1.A1_at CV229183 hypothetical protein - 2e-2 At3g48800 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.01 5e-1 38 PtpAffx.222337.1.S1_at pmrna39683 - - 3e-1 At4g37810 unknown protein C.G. S.X.
0.01 2e+0 36 PtpAffx.789.1.A1_at CV273809 - - 3e+0 At3g22436 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 1128 Arabidopsis thaliana At4g11380 826741 beta-adaptin, putative F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MOFPBA - - - C.G. S.X.
0.25 2e-46 188 Glycine max Gma.3836.1.S1_at BI317703 - - 1e-26 At4g23460 beta-adaptin, putative C.G. S.X.
0.32 2e-87 323 Hordeum vulgare Contig6703_at Contig6703 - - 4e-108 At4g11380 beta-adaptin, putative C.G. S.X.
0.50 0 811 Oryza sativa Os03g0355600 AK068938.1 - Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B 0 At4g23460 beta-adaptin, putative C.G. S.X.
0.41 9e-76 286 Triticum aestivum Ta.27318.1.S1_at BG908329 - - 2e-76 At4g11380 beta-adaptin, putative C.G. S.X.
0.25 9e-70 264 Vitis vinifera 1619414_at CF607341 hypothetical protein LOC100241708 - 1e-8 At4g23460 beta-adaptin, putative C.G. S.X.
0.41 3e-101 369 Zea mays Zm.12502.1.S1_at CF349170 - - 7e-83 At4g11380 beta-adaptin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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