CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203198.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.203198.1.S1_at pmrna6338 hypothetical protein - 6e-8 At1g62960 ACS10 (ACC SYNTHASE 10) S.X. H.G.
0.43 69.7 Ptp.1227.1.S1_at CV256574 hypothetical protein - 6e-59 At1g08490 CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE) S.X. H.G.
0.35 59.7 Ptp.2632.1.S1_at CK111660 - - 6e-72 Atcg00710 - S.X. H.G.
0.35 59.7 PtpAffx.22402.1.A1_at CX173202 - - 3e-32 At5g12130 PDE149 (PIGMENT DEFECTIVE 149) S.X. H.G.
0.18 30.8 PtpAffx.1027.1.A1_a_at CV254661 hypothetical protein - 6e-16 At1g63010 SPX (SYG1/Pho81/XPR1) domain-containing protein S.X. H.G.
0.18 30.8 PtpAffx.208772.1.S1_at pmrna17387 hypothetical protein - 4e-92 At2g32040 integral membrane transporter family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.2 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 7e-30 133 PtpAffx.213034.1.S1_at pmrna25505 hypothetical protein - 4e-15 At5g51690 ACS12 C.G. S.X.
0.03 7e-2 40 PtpAffx.206387.1.S1_at pmrna12687 1-aminocyclopropane-1-carboxylate - 5e-14 At4g26200 ACS7 C.G. S.X.
0.02 7e-2 40 PtpAffx.202671.1.S1_at pmrna5326 hypothetical protein - 7e-3 At4g17060 unknown protein C.G. S.X.
0.02 7e-2 40 PtpAffx.202003.1.S1_at pmrna3996 1-aminocyclopropane-1-carboxylate - 2e-22 At4g08040 ACS11 C.G. S.X.
0.01 3e-1 38 PtpAffx.224613.1.S1_at pmrna43317 hypothetical protein - 3e-19 At1g70450 protein kinase family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.213056.1.S1_at pmrna25549 hypothetical protein - 1e-2 At1g53645 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 1e+0 36 PtpAffx.653.14.A1_s_at CX173034 hypothetical protein - 3e-4 At1g70470 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.45799.1.S1_at CK094406 - - 3e-1 At4g33490 aspartic-type endopeptidase C.G. S.X.
0.01 1e+0 36 PtpAffx.225079.1.S1_at pmrna44172 hypothetical protein - 5e-24 At4g30360 ATCNGC17 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-8 59 Arabidopsis thaliana At1g62960 842598 ACS10 (ACC SYNTHASE 10) Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. - - - C.G. S.X.
0.23 2e-14 81 Glycine max GmaAffx.85309.1.S1_at BE209956 - - 3e-1 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative C.G. S.X.
0.08 4e-7 56 Hordeum vulgare Contig9131_s_at Contig9131 - - 3e+0 At5g51690 ACS12 C.G. S.X.
0.08 3e-5 52 Oryza sativa Os06g0130400 AK065212.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 1e+0 At1g62960 ACS10 (ACC SYNTHASE 10) C.G. S.X.
0.06 4e-3 44 Triticum aestivum Ta.24341.1.S1_x_at CA603580 1-aminocyclopropane-1-carboxylate synthase - 1e+1 At5g48210 unknown protein C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1612551_at CF605967 hypothetical protein LOC100251825 - 4e+0 At3g19650 cyclin-related C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4387.1.A1_at CF627716 hypothetical protein LOC100191315 - 4e+0 At5g40590 DC1 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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