CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.203077.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 87.0 PtpAffx.203077.1.S1_at pmrna6091 hypothetical protein - 2e-1 At4g08330 unknown protein S.X. H.G.
0.61 87.0 PtpAffx.212682.1.S1_at pmrna24799 hypothetical protein - 1e-111 At1g18370 HIK (HINKEL) S.X. H.G.
0.41 67.7 PtpAffx.49543.1.A1_at CV281092 - - 8e-18 At3g05740 RECQI1 (Arabidopsis RecQ helicase l1) S.X. H.G.
0.40 67.0 PtpAffx.206293.1.S1_at pmrna12477 hypothetical protein - 4e-2 At2g37960 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.200425.1.S1_at pmrna852 hypothetical protein - 8e-27 At1g63640 kinesin motor protein-related S.X. H.G.
0.36 61.6 PtpAffx.212682.1.S1_x_at pmrna24799 hypothetical protein - 1e-111 At1g18370 HIK (HINKEL) S.X. H.G.
0.12 19.6 PtpAffx.27019.1.S1_at CV269589 hypothetical protein - 1e-13 At5g15070 acid phosphatase/ oxidoreductase/ transition metal ion binding S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.5 99.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.8 98.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.6 98.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-3 44 PtpAffx.202694.1.S1_x_at pmrna5381 hypothetical protein - 3e-15 At3g25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) C.G. S.X.
0.02 5e-3 44 PtpAffx.202694.1.S1_at pmrna5381 hypothetical protein - 3e-15 At3g25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) C.G. S.X.
0.01 2e-2 42 PtpAffx.214532.1.S1_at pmrna28245 hypothetical protein - 2e-3 At4g20060 EMB1895 (EMBRYO DEFECTIVE 1895) C.G. S.X.
0.01 3e-1 38 PtpAffx.70652.1.A1_at CV243076 hypothetical protein - 8e-19 At4g28480 DNAJ heat shock family protein C.G. S.X.
0.02 3e-1 38 PtpAffx.658.4.S1_at BU814411 - - 1e+0 At3g48185 unknown protein C.G. S.X.
0.02 3e-1 38 PtpAffx.249.283.S1_at BP935767 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 3e-5 At4g15350 CYP705A2 C.G. S.X.
0.02 3e-1 38 PtpAffx.24267.1.S1_s_at CV266594 hypothetical protein - 6e-6 At1g69970 CLE26 (CLAVATA3/ESR-RELATED 26) C.G. S.X.
0.01 3e-1 38 PtpAffx.224497.1.S1_at pmrna43085 hypothetical protein - 8e-4 At1g76250 unknown protein C.G. S.X.
0.02 3e-1 38 PtpAffx.223324.1.S1_s_at pmrna41260 hypothetical protein - 4e-1 At2g28570 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At4g08330 826387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P - - - C.G. S.X.
0.02 2e-2 42 Glycine max Gma.17078.1.S1_at AW705393 - - 4e+0 At5g03495 nucleotide binding C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig4031_x_at Contig4031 - - 5e+0 Atmg00270 - C.G. S.X.
0.02 4e-1 38 Oryza sativa Os.55483.1.S1_at - - - 0 C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1607903_at CF608166 hypothetical protein LOC100267377 - 1e+0 At1g67670 unknown protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.8561.2.A1_a_at BM332166 hypothetical protein LOC100277438 - 4e+0 At4g05070 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage