Gene omics information

Query gene ID	PtpAffx.203064.1.S1_at
Gene name	autoinhibited calcium ATPase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.203064.1.S1_at	pmrna6068	autoinhibited calcium ATPase	-	3e-82	At4g37640	ACA2 (CALCIUM ATPASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.205756.1.S1_at	pmrna11366	high affinity inorganic phosphate transporter	-	1e-46	At2g38940	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.213733.1.S1_at	pmrna26803	aminophospholipid ATPase	-	1e-13	At5g04930	ALA1 (aminophospholipid ATPase1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.2445.1.S1_at	CK093678	hypothetical protein	-	3e-11	At1g76160	sks5 (SKU5 Similar 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.7607.1.S1_s_at	BU813493	hypothetical protein	-	2e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.201589.1.S1_at	pmrna3127	hypothetical protein	-	6e-1	At1g28190	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.114811.1.A1_at	CV242821	hypothetical protein	-	4e-4	At1g47128	RD21 (responsive to dehydration 21)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
21.9	99.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
16.1	99.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
10.8	99.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.1	98.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.8	72.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.5	63.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	2561	PtpAffx.205393.1.S1_at	pmrna10680	-	-	7e-67	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	6e-84	313	Ptp.1858.1.S1_at	BU812732	hypothetical protein	-	8e-71	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	9e-83	309	Ptp.7781.1.S1_at	DN499160	autoinhibited calcium ATPase	-	1e+0	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	5e-23	111	PtpAffx.6322.2.S1_at	CV241382	hypothetical protein	-	3e-23	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-8	61	PtpAffx.203527.1.S1_at	pmrna7009	autoinhibited calcium ATPase	-	9e-27	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-5	52	PtpAffx.81470.1.S1_s_at	CV245113	autoinhibited calcium ATPase	-	1e-51	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-5	52	PtpAffx.81470.1.S1_at	CV245113	autoinhibited calcium ATPase	-	1e-51	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-5	52	PtpAffx.209467.1.S1_at	pmrna18776	autoinhibited calcium ATPase	-	6e-136	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-4	48	PtpAffx.206177.1.S1_at	pmrna12264	autoinhibited calcium ATPase	-	1e-52	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	3e-82	307	Arabidopsis thaliana	At4g37640	829918	ACA2 (CALCIUM ATPASE 2)	Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.61	5e-171	603	Glycine max	Gma.1047.1.S1_at	AF195028.1	plasma membrane Ca2+-ATPase	-	2e-64	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please select
0.22	4e-64	246	Hordeum vulgare	Contig9357_at	Contig9357	-	-	2e-42	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.36	3e-80	301	Oryza sativa	Os12g0586600	AK100436.1	-	Plasma membrane Ca2+-ATPase	2e-59	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	4e-32	141	Triticum aestivum	TaAffx.50789.1.S1_at	CA735312	-	-	3e-13	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.38	5e-124	444	Vitis vinifera	1613557_at	BM436858	-	-	4e-66	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select
0.04	1e-5	52	Zea mays	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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