Gene omics information

Query gene ID	PtpAffx.203035.1.S1_at
Gene name	AP2/ERF domain-containing transcription factor
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.203035.1.S1_at	pmrna6011	AP2/ERF domain-containing transcription factor	-	3e-2	At2g47520	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.94	99.6	PtpAffx.9959.1.A1_at	BP936055	hypothetical protein	-	1e+0	At3g59450	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.90	97.9	PtpAffx.8577.2.A1_at	CV256116	-	-	2e-31	At4g08950	EXO (EXORDIUM)	S.X.	H.G.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.119343.2.A1_a_at	BP936124	hypothetical protein	-	4e-6	At4g29780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.86	97.4	PtpAffx.8810.1.S1_at	CK096534	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-34	At1g21910	AP2 domain-containing transcription factor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.158361.1.S1_at	CA822309	-	-	1e+0	At3g47510	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.204670.1.S1_at	pmrna9194	AP2/ERF domain-containing transcription factor	-	7e-9	At1g43160	RAP2.6 (related to AP2 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.93687.1.S1_at	BP927882	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.84	97.1	PtpAffx.54562.1.A1_at	CV243605	AP2/ERF domain-containing transcription factor	-	8e-31	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.215817.1.S1_at	pmrna30229	AP2/ERF domain-containing transcription factor	-	8e-7	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.4	100.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
38.4	100.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.3	81.0	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.2	79.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.1	78.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.8	72.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.8	72.0	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.6	66.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	9e-99	361	Ptp.3747.1.S1_s_at	DN488219	AP2/ERF domain-containing transcription factor	-	2e-1	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-10	65	PtpAffx.42822.1.A1_at	CX177625	AP2/ERF domain-containing transcription factor	-	7e-13	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	7e-4	46	Ptp.3323.1.S1_s_at	CV267890	AP2/ERF domain-containing transcription factor	-	1e-11	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-3	44	PtpAffx.200313.1.S1_at	pmrna620	AP2/ERF domain-containing transcription factor	-	7e-10	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-3	44	PtpAffx.102143.1.A1_s_at	CV235917	AP2/ERF domain-containing transcription factor	-	3e-10	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.208714.1.S1_at	pmrna17280	AP2/ERF domain-containing transcription factor	-	6e-9	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.81414.1.S1_at	DN496107	hypothetical protein	-	6e-7	At5g02750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.222832.1.S1_at	pmrna40507	hypothetical protein	-	5e+0	At5g66000	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.219066.1.S1_at	pmrna34870	hypothetical protein	-	4e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-2	40	Arabidopsis thaliana	At2g47520	819365	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	7e-7	56	Glycine max	Gma.15943.2.S1_at	BE057404	-	-	2e-5	At2g33710	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.04	1e-6	54	Hordeum vulgare	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select
0.04	4e-3	44	Oryza sativa	Os03g0150200	AY339376.1	-	Ethylene-responsive element binding protein	8e-2	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-3	44	Triticum aestivum	TaAffx.16192.1.S1_at	BQ169008	-	-	1e-8	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select
0.12	4e-11	67	Vitis vinifera	1613698_at	CF403989	hypothetical protein LOC100242632	-	7e-6	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.05	3e-3	42	Zea mays	Zm.18520.1.A1_at	CF632042	-	-	8e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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