CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.202991.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) S.X. H.G.
0.61 87.0 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 S.X. H.G.
0.33 57.5 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein S.X. H.G.
0.28 50.5 PtpAffx.220669.1.S1_at pmrna37079 hypothetical protein - 4e+1 At5g51910 TCP family transcription factor, putative S.X. H.G.
0.25 43.6 PtpAffx.27724.1.S1_at BU873611 - - 2e-1 At1g03140 splicing factor Prp18 family protein S.X. H.G.
0.17 29.1 PtpAffx.221656.1.S1_at pmrna38651 hypothetical protein - 3e-4 At3g17950 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 98.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.5 98.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 40 PtpAffx.214476.1.S1_at pmrna28154 hypothetical protein - 5e-1 At5g58020 unknown protein C.G. S.X.
0.04 5e-2 38 PtpAffx.41401.1.S1_at CK104636 - - 9e-2 At3g12650 unknown protein C.G. S.X.
0.02 5e-2 38 PtpAffx.210636.1.S1_at pmrna20864 hypothetical protein - 7e-66 At3g12860 nucleolar protein Nop56, putative C.G. S.X.
0.03 5e-2 38 PtpAffx.206508.1.S1_s_at pmrna12910 hypothetical protein - 3e-2 At5g58020 unknown protein C.G. S.X.
0.02 2e-1 36 PtpAffx.204795.1.S1_at pmrna9446 hypothetical protein - 1e-17 At1g07110 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE) C.G. S.X.
0.02 8e-1 34 PtpAffx.214360.1.S1_at pmrna27931 hypothetical protein - 5e-61 At1g77180 chromatin protein family C.G. S.X.
0.03 8e-1 34 PtpAffx.20988.1.S1_at CV245916 - - 3e-2 At2g04039 unknown protein C.G. S.X.
0.01 8e-1 34 PtpAffx.208747.1.S1_x_at pmrna17342 autoinhibited calcium ATPase - 3e-45 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
0.01 8e-1 34 PtpAffx.208747.1.S1_at pmrna17342 autoinhibited calcium ATPase - 3e-45 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 34 Arabidopsis thaliana At3g04510 819607 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM - - - C.G. S.X.
0.06 2e-1 36 Glycine max GmaAffx.20865.1.S1_at AW185038 - - 2e-23 At2g41960 unknown protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HVSMEn0018C16r2_x_at HVSMEn0018C16r2 - - 3e+0 At3g43420 unknown protein C.G. S.X.
0.05 5e+0 32 Oryza sativa Os07g0448900 NM_187121.1 - - 7e-1 At5g48890 transcription factor C.G. S.X.
0.04 2e+0 32 Triticum aestivum Ta.4471.1.S1_x_at CA612886 - - 1e-5 At1g07540 TRFL2 (TRF-LIKE 2) C.G. S.X.
0.05 2e-1 34 Vitis vinifera 1620876_at CB350001 - - 4e-3 At2g05840 PAA2 (20S PROTEASOME SUBUNIT PAA2) C.G. S.X.
0.04 4e+0 30 Zea mays ZmAffx.134.1.A1_at AI667702 - - 3e+0 At1g09220 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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