Gene omics information

Query gene ID	PtpAffx.202881.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.202881.1.S1_s_at	pmrna5689	hypothetical protein	-	1e-21	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.156655.1.S1_at	BU875712	hypothetical protein	-	6e-15	At1g35620	ATPDIL5-2 (PDI-LIKE 5-2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	96.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-124	448	PtpAffx.142752.1.S1_at	CF233087	hypothetical protein	-	1e-9	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	42	PtpAffx.210645.1.S1_at	pmrna20881	hypothetical protein	-	4e-37	At5g50380	ATEXO70F1 (exocyst subunit EXO70 family protein F1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-2	40	PtpAffx.5833.1.S1_at	CF229058	hypothetical protein	-	6e-9	At5g50380	ATEXO70F1 (exocyst subunit EXO70 family protein F1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.201061.1.S1_at	pmrna2093	hypothetical protein	-	6e-2	At5g13150	ATEXO70C1 (exocyst subunit EXO70 family protein C1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.50349.1.A1_at	CV269995	hypothetical protein	-	1e-7	At5g64850	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.223112.1.S1_at	pmrna40941	hypothetical protein	-	4e-9	At5g61010	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.217544.1.S1_at	pmrna32856	hypothetical protein	-	6e-1	At1g70790	C2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.215083.1.S1_at	pmrna29055	hypothetical protein	-	6e-2	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.210917.1.S1_at	pmrna21450	hypothetical protein	-	3e-2	At1g54920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-21	105	Arabidopsis thaliana	At1g72470	843579	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	7e-21	103	Glycine max	Gma.11087.1.S1_at	AW119547	-	-	1e-22	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	C.G.	S.X.	Please select
0.02	3e-2	40	Hordeum vulgare	Contig13144_at	Contig13144	-	-	8e-23	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	C.G.	S.X.	Please select
0.01	8e-3	44	Oryza sativa	Os01g0827600	AK122173.1	-	Exo70 exocyst complex subunit family protein	6e-6	At3g14090	ATEXO70D3 (exocyst subunit EXO70 family protein D3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Triticum aestivum	Ta.4804.3.S1_at	CA649138	-	-	7e-2	At5g50850	MAB1 (MACCI-BOU)	C.G.	S.X.	Please select
0.02	7e-5	48	Vitis vinifera	1616751_at	CF404106	hypothetical protein LOC100268151	-	6e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Zea mays	ZmAffx.32.1.S1_at	AI657422	-	-	3e+0	At1g12020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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