Gene omics information

Query gene ID	PtpAffx.20260.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.20260.2.S1_a_at	CV257316	hypothetical protein	-	1e-3	At4g22190	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.13792.2.S1_at	CV283738	hypothetical protein	-	7e-14	At4g10610	CID12	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.333.1.S1_at	CK088426	hypothetical protein	-	6e-7	At4g12040	zinc finger (AN1-like) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.7711.1.A1_s_at	CN520343	hypothetical protein	-	5e-10	At2g20840	secretory carrier membrane protein (SCAMP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.8	97.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	2e-50	200	PtpAffx.76540.1.A1_at	CV226331	hypothetical protein	-	1e+1	At5g29070	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.69283.1.A1_at	CV263306	hypothetical protein	-	7e+0	Atmg00260	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.216798.1.S1_at	pmrna31817	arogenate dehydrogenase	-	7e-40	At5g34930	arogenate dehydrogenase	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.212784.1.S1_at	pmrna25018	hypothetical protein	-	2e-3	At2g18860	syntaxin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.210157.1.S1_at	pmrna20013	hypothetical protein	-	4e-3	At4g03160	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.204420.1.S1_at	pmrna8690	hypothetical protein	-	1e-2	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.202381.1.S1_at	pmrna4783	hypothetical protein	-	1e+0	At5g27760	hypoxia-responsive family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.201762.1.S1_at	pmrna3518	cytochrome P450	-	2e-22	At2g42850	CYP718	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.194.1.S1_at	CA821968	hypothetical protein	-	1e-21	At1g29370	kinase-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	44	Arabidopsis thaliana	At4g22190	828310	unknown protein	F:unknown;P:unknown;C:unknown;OMPFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.85625.1.A1_at	BE660249	-	-	1e+1	At2g24450	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig18021_at	Contig18021	-	-	9e-5	At1g77550	protein binding / tubulin-tyrosine ligase	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.12477.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.50290.1.S1_at	CA743159	-	-	2e+0	At1g04660	glycine-rich protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1614037_at	CB341741	-	-	4e+0	At5g42232	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.4664.3.A1_a_at	AY108266.1	fatty acid elongase	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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