CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.202093.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) S.X. H.G.
0.55 82.2 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative S.X. H.G.
0.33 57.5 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 S.X. H.G.
0.22 38.3 PtpAffx.215807.1.S1_at pmrna30208 hypothetical protein - 2e-3 At2g15760 calmodulin-binding protein S.X. H.G.
0.12 19.6 PtpAffx.20696.1.S1_at CX654772 - - 4e-5 At1g65690 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.5 99.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.2 99.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.9 96.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 40 Ptp.2235.2.A1_a_at CV243071 hypothetical protein - 9e-2 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.01 9e-2 38 PtpAffx.208747.1.S1_x_at pmrna17342 autoinhibited calcium ATPase - 3e-45 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
0.01 9e-2 38 PtpAffx.208747.1.S1_at pmrna17342 autoinhibited calcium ATPase - 3e-45 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
0.01 9e-2 38 PtpAffx.208173.1.S1_at pmrna16258 autoinhibited calcium ATPase - 7e-55 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
0.01 9e-2 38 PtpAffx.208173.1.S1_x_at pmrna16258 autoinhibited calcium ATPase - 7e-55 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
0.04 9e-2 38 PtpAffx.161922.1.A1_s_at CK094074 autoinhibited calcium ATPase /// autoinhibited calcium ATPase - 3e+0 At4g17453 unknown protein C.G. S.X.
0.04 9e-2 38 Ptp.4324.1.S1_at DN486139 - - 1e+0 At5g36910 THI2.2 (THIONIN 2.2) C.G. S.X.
0.04 3e-1 36 PtpAffx.221246.1.S1_s_at pmrna37989 hypothetical protein - 1e+0 At4g00525 unknown protein C.G. S.X.
0.03 3e-1 36 PtpAffx.216706.1.S1_at pmrna31659 hypothetical protein - 4e-37 At1g59740 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-2 38 Arabidopsis thaliana At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF - - - C.G. S.X.
0.13 2e-2 40 Glycine max Gma.8386.1.S1_at BU089704 - - 9e-1 At2g02060 transcription factor C.G. S.X.
0.03 7e+0 30 Hordeum vulgare HO02C20S_at HO02C20S - - 1e+0 At2g20390 unknown protein C.G. S.X.
0.04 1e-1 38 Oryza sativa OsAffx.2035.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.84372.1.S1_at CA654239 - - 3e-4 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.04 7e-2 36 Vitis vinifera 1622014_at CF404401 hypothetical protein LOC100249487 - 2e-2 At1g76640 calmodulin-related protein, putative C.G. S.X.
0.04 7e+0 30 Zea mays ZmAffx.729.1.S1_at AI740018 - - 2e-4 At4g02450 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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