Gene omics information

Query gene ID	PtpAffx.202040.1.S1_at
Gene name	nramp transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.202040.1.S1_at	pmrna4065	nramp transporter	-	5e-119	At1g47240	NRAMP2	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.218689.1.S1_s_at	pmrna34398	aminophospholipid ATPase /// hypothetical protein /// aminophospholipid ATPase	-	4e-70	At1g59820	ALA3 (Aminophospholipid ATPase3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.99255.1.S1_s_at	CK090997	hypothetical protein	-	3e-2	At3g59770	SAC9	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.211018.1.S1_at	pmrna21651	hypothetical protein	-	2e-152	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.20148.1.A1_at	CV237054	hypothetical protein	-	5e-47	At5g17010	sugar transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.65771.2.A1_a_at	CV242987	hypothetical protein	-	3e-23	At1g11390	ABC1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-177	623	PtpAffx.71433.2.A1_a_at	DN491697	nramp transporter	-	1e-37	At1g47240	NRAMP2	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	2e-36	155	PtpAffx.218535.1.S1_at	pmrna34191	nramp transporter	-	4e-64	At2g23150	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-11	71	PtpAffx.134269.1.A1_at	CV277353	-	-	3e-5	At2g23150	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	4e-6	54	PtpAffx.126034.1.S1_at	BP922562	-	-	6e-27	At2g23150	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-2	40	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.219155.1.S1_at	pmrna34993	hypothetical protein	-	7e+0	At1g57790	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.209702.1.S1_at	pmrna19149	hypothetical protein	-	1e-2	At1g61100	disease resistance protein (TIR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.203571.1.S1_at	pmrna7097	hypothetical protein	-	2e-8	At2g38720	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.200331.1.S1_at	pmrna659	hypothetical protein	-	2e-1	At4g09270	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	5e-119	428	Arabidopsis thaliana	At1g47240	841127	NRAMP2	Member of the NRAMP2 gene family of metal ion transporters.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	9e-26	119	Glycine max	GmaAffx.35912.1.S1_at	BE822265	-	-	4e-14	At1g47240	NRAMP2	C.G.	S.X.	Please select
0.09	6e-3	42	Hordeum vulgare	Contig24105_at	Contig24105	-	-	9e-2	At2g23150	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	C.G.	S.X.	Please select
0.07	1e-7	59	Oryza sativa	Os12g0581600	AK071485.1	-	Integral membrane protein	7e-8	At1g47240	NRAMP2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-5	52	Triticum aestivum	Ta.13247.2.S1_a_at	CA646751	-	-	5e-6	At1g47240	NRAMP2	C.G.	S.X.	Please select
0.15	3e-19	95	Vitis vinifera	1617338_at	BQ793025	hypothetical protein LOC100262579	-	2e-22	At1g47240	NRAMP2	C.G.	S.X.	Please select
0.09	1e-6	54	Zea mays	Zm.13647.1.S1_at	AY107242.1	metal transporter Nramp3	-	3e-12	At5g67330	ATNRAMP4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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