Gene omics information

Query gene ID PtpAffx.202040.1.S1_at
Gene name nramp transporter
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0PtpAffx.202040.1.S1_atpmrna4065nramp transporter-5e-119At1g47240NRAMP2S.X.H.G.
0.5078.6PtpAffx.218689.1.S1_s_atpmrna34398aminophospholipid ATPase /// hypothetical protein /// aminophospholipid ATPase-4e-70At1g59820ALA3 (Aminophospholipid ATPase3)S.X.H.G.
0.4774.6PtpAffx.99255.1.S1_s_atCK090997hypothetical protein-3e-2At3g59770SAC9S.X.H.G.
0.4673.7PtpAffx.211018.1.S1_atpmrna21651hypothetical protein-2e-152At5g28850calcium-binding EF hand family proteinS.X.H.G.
0.4471.9PtpAffx.20148.1.A1_atCV237054hypothetical protein-5e-47At5g17010sugar transporter family proteinS.X.H.G.
0.3153.7PtpAffx.65771.2.A1_a_atCV242987hypothetical protein-3e-23At1g11390ABC1 family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.096.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.794.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.594.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.092.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.691.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
2.188.6GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.188.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.302e-177623PtpAffx.71433.2.A1_a_atDN491697nramp transporter-1e-37At1g47240NRAMP2C.G.S.X.
0.462e-36155PtpAffx.218535.1.S1_atpmrna34191nramp transporter-4e-64At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.132e-1171PtpAffx.134269.1.A1_atCV277353--3e-5At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.114e-654PtpAffx.126034.1.S1_atBP922562--6e-27At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.026e-240Ptp.3643.1.S1_atBU836758hypothetical protein-7e-3At1g53620unknown proteinC.G.S.X.
0.011e+036PtpAffx.219155.1.S1_atpmrna34993hypothetical protein-7e+0At1g57790F-box family proteinC.G.S.X.
0.011e+036PtpAffx.209702.1.S1_atpmrna19149hypothetical protein-1e-2At1g61100disease resistance protein (TIR class), putativeC.G.S.X.
0.011e+036PtpAffx.203571.1.S1_atpmrna7097hypothetical protein-2e-8At2g38720MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)C.G.S.X.
0.011e+036PtpAffx.200331.1.S1_atpmrna659hypothetical protein-2e-1At4g09270unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.625e-119428Arabidopsis thalianaAt1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.---C.G.S.X.
0.219e-26119Glycine maxGmaAffx.35912.1.S1_atBE822265--4e-14At1g47240NRAMP2C.G.S.X.
0.096e-342Hordeum vulgareContig24105_atContig24105--9e-2At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)C.G.S.X.
0.071e-759Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.071e-552Triticum aestivumTa.13247.2.S1_a_atCA646751--5e-6At1g47240NRAMP2C.G.S.X.
0.153e-1995Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.091e-654Zea maysZm.13647.1.S1_atAY107242.1metal transporter Nramp3-3e-12At5g67330ATNRAMP4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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