CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201979.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.201979.1.S1_at pmrna3951 hypothetical protein - 3e-26 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.67 91.1 PtpAffx.211570.1.S1_at pmrna22678 hypothetical protein - 3e-12 At2g46130 WRKY43 S.X. H.G.
0.60 86.0 PtpAffx.204772.1.S1_at pmrna9397 hypothetical protein - 1e-25 At2g14210 AGL44 (AGAMOUS-LIKE 44) S.X. H.G.
0.57 84.2 PtpAffx.211570.1.S1_x_at pmrna22678 hypothetical protein - 3e-12 At2g46130 WRKY43 S.X. H.G.
0.40 67.0 PtpAffx.18783.1.A1_at CV233908 amino acid permease - 1e-19 At1g77380 AAP3 S.X. H.G.
0.36 61.6 PtpAffx.202077.1.S1_at pmrna4143 cytochrome P450 ent-kaurene oxidase - 2e-13 At5g25900 GA3 (GA REQUIRING 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.1 99.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
18.1 99.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
13.4 99.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.1 97.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1362 PtpAffx.201979.1.S1_x_at pmrna3951 hypothetical protein - 3e-26 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.89 0 753 PtpAffx.205416.1.S1_at pmrna10719 hypothetical protein - 2e-21 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.12 1e-10 67 PtpAffx.204772.1.S1_at pmrna9397 hypothetical protein - 1e-25 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.34 2e-9 63 PtpAffx.201225.1.S1_s_at pmrna2438 hypothetical protein - 6e-24 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.30 2e-9 63 PtpAffx.201227.1.S1_at pmrna2440 hypothetical protein - 7e-24 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.04 2e-6 54 Ptp.3453.1.S1_at CV243068 MIKC mads-box transcription factor - 3e-21 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
0.05 8e-6 52 PtpAffx.92754.1.S1_at CK096310 hypothetical protein - 6e-10 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.06 8e-6 52 PtpAffx.56981.3.S1_at CV242364 MIKC mads-box transcription factor SOC1 - 4e-23 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
0.04 1e-4 48 PtpAffx.99434.1.S1_at CV245843 hypothetical protein - 6e-31 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 3e-26 119 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.30 9e-12 71 Glycine max GmaAffx.71421.1.S1_at AW706936 - - 4e-21 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.05 4e-5 48 Hordeum vulgare Contig6954_at Contig6954 - - 5e-1 At3g17330 ECT6 (evolutionarily conserved C-terminal region 6) C.G. S.X.
0.25 1e-14 81 Oryza sativa Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.08 6e-6 52 Triticum aestivum TaAffx.1124.1.S1_at BJ233977 - - 1e+0 At2g22120 protein binding / zinc ion binding C.G. S.X.
0.04 2e-3 42 Vitis vinifera 1621827_at CF373383 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.23 1e-29 129 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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