CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201963.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.201963.1.S1_at pmrna3917 hypothetical protein - 5e-44 At1g09730 Ulp1 protease family protein S.X. H.G.
0.55 82.2 PtpAffx.211938.1.S1_s_at pmrna23443 hypothetical protein - 4e-12 At4g12710 armadillo/beta-catenin repeat family protein S.X. H.G.
0.55 82.2 PtpAffx.204194.1.S1_at pmrna8256 hypothetical protein - 4e-1 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) S.X. H.G.
0.46 73.7 PtpAffx.136067.1.A1_at CK090556 - - 4e-1 At1g08270 - S.X. H.G.
0.22 38.3 PtpAffx.16869.1.A1_at CV244910 hypothetical protein - 4e-38 At5g11500 unknown protein S.X. H.G.
0.14 23.5 PtpAffx.26568.1.A1_at CK091509 hypothetical protein - 2e-22 At1g22860 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.5 98.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 0 890 PtpAffx.80257.1.S1_s_at DN494706 hypothetical protein - 8e-2 At5g52500 unknown protein C.G. S.X.
0.27 0 890 PtpAffx.80257.1.S1_at DN494706 hypothetical protein - 8e-2 At5g52500 unknown protein C.G. S.X.
0.30 0 835 PtpAffx.74063.1.A1_s_at CV262783 hypothetical protein - 1e+0 At4g00100 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) C.G. S.X.
0.33 8e-96 353 PtpAffx.13445.1.A1_at CV281260 hypothetical protein - 5e-1 At3g59330 anthocyanin-related membrane protein family C.G. S.X.
0.09 2e-41 173 PtpAffx.205438.1.S1_x_at pmrna10751 hypothetical protein - 3e-1 At1g57610 unknown protein C.G. S.X.
0.09 2e-41 173 PtpAffx.205438.1.S1_at pmrna10751 hypothetical protein - 3e-1 At1g57610 unknown protein C.G. S.X.
0.11 3e-24 115 PtpAffx.213783.1.S1_at pmrna26908 hypothetical protein - 3e-4 At1g09730 Ulp1 protease family protein C.G. S.X.
0.12 1e-23 113 PtpAffx.207017.1.S1_at pmrna13900 hypothetical protein - 3e-14 At1g09730 Ulp1 protease family protein C.G. S.X.
0.01 2e-1 40 PtpAffx.221154.1.S1_at pmrna37796 hypothetical protein - 4e-3 At1g59740 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 5e-44 180 Arabidopsis thaliana At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA - - - C.G. S.X.
0.07 1e-5 54 Glycine max Gma.6751.1.S1_at BG237159 - - 2e-10 At1g09730 Ulp1 protease family protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig1958_at Contig1958 - - 9e-27 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism C.G. S.X.
0.06 2e-11 73 Oryza sativa Os05g0207900 AK068570.1 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 4e-10 At1g09730 Ulp1 protease family protein C.G. S.X.
0.01 3e-2 42 Triticum aestivum Ta.24690.2.S1_at CA699259 - - 8e-2 At3g52900 unknown protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1617391_at CF211113 hypothetical protein LOC100254621 - 1e-55 At1g04620 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family C.G. S.X.
0.01 2e-1 38 Zea mays Zm.762.1.A1_a_at BG349623 - - 1e-4 At3g05740 RECQI1 (Arabidopsis RecQ helicase l1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage