Gene omics information

Query gene ID	PtpAffx.201518.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.201518.1.S1_at	pmrna2994	hypothetical protein	-	2e-1	At2g42940	DNA-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.58064.1.S1_at	CF234724	f-box family protein	-	1e-16	At4g24060	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.90771.1.A1_at	CK092819	f-box family protein	-	3e-1	At4g24060	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.5552.1.S1_s_at	AI161787	hypothetical protein	-	4e-1	At1g66070	translation initiation factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.16980.1.A1_at	CK095992	hypothetical protein	-	5e+0	At3g02310	SEP2 (SEPALLATA 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.81247.1.S1_s_at	CV267779	hypothetical protein	-	2e+0	At3g62580	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.0	99.6	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
11.6	99.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.9	99.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.5	98.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.0	98.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	3e-177	621	PtpAffx.205903.1.S1_at	pmrna11702	hypothetical protein	-	4e-9	At3g04570	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	6e-9	61	PtpAffx.222504.1.S1_s_at	pmrna39980	hypothetical protein	-	2e-2	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-8	59	PtpAffx.211007.1.S1_at	pmrna21629	hypothetical protein	-	1e-5	At3g04570	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	9e-8	57	PtpAffx.220048.1.S1_at	pmrna36320	hypothetical protein	-	7e-7	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	8e-5	48	PtpAffx.209324.1.S1_at	pmrna18438	hypothetical protein	-	3e-10	At3g55560	AGF2 (AT-hook protein of GA feedback 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	8e-5	48	PtpAffx.162571.1.A1_at	CV253632	-	-	3e-12	At4g14465	DNA-binding protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-2	38	PtpAffx.207720.1.S1_x_at	pmrna15337	hypothetical protein	-	2e-4	At3g55560	AGF2 (AT-hook protein of GA feedback 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	8e-2	38	PtpAffx.207720.1.S1_at	pmrna15337	hypothetical protein	-	2e-4	At3g55560	AGF2 (AT-hook protein of GA feedback 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-1	36	PtpAffx.64868.1.S1_at	CK094921	-	-	5e+0	At4g01680	MYB55 (myb domain protein 55)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-1	36	Arabidopsis thaliana	At2g42940	818895	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:chloroplast;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-3	44	Glycine max	Gma.2112.1.S1_at	AW309814	-	-	3e-2	At4g22810	DNA-binding protein-related	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	Contig4556_at	Contig4556	-	-	1e+0	At1g02750	zinc ion binding	C.G.	S.X.	Please select
0.06	5e-4	46	Oryza sativa	OsAffx.15547.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	9e-1	34	Triticum aestivum	TaAffx.112788.1.S1_at	CA620934	-	-	8e-1	At1g20900	ESC (ESCAROLA)	C.G.	S.X.	Please select
0.15	1e-18	91	Vitis vinifera	1621103_at	CB003423	-	-	2e-12	At3g04570	DNA-binding protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.17090.1.S1_at	AW155707	transferase, transferring glycosyl groups	-	2e-4	At2g20810	GAUT10 (GALACTURONOSYLTRANSFERASE 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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