Gene omics information

Query gene ID	PtpAffx.201516.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	97.1	PtpAffx.201516.1.S1_at	pmrna2985	hypothetical protein	-	5e-69	At1g27650	ATU2AF35A	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.210841.1.S1_at	pmrna21292	chromatin remodeling complex subunit	-	6e-2	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.54906.1.S1_at	BP936832	-	-	1e-8	At1g57680	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.215417.1.S1_at	pmrna29582	hypothetical protein	-	3e-173	At5g15680	binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.34905.2.A1_a_at	CK095808	-	-	1e+0	At4g28250	ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.140774.1.A1_at	CV245384	hypothetical protein	-	1e+0	At4g21620	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.7945.1.S1_at	CV231943	hypothetical protein	-	6e+0	At5g47060	senescence-associated protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.202430.1.S1_s_at	pmrna4874	hypothetical protein	-	1e+0	At4g03090	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.201256.1.S1_s_at	pmrna2492	hypothetical protein	-	1e-6	At1g50620	PHD finger family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	1035	PtpAffx.4454.3.S1_at	CV256114	hypothetical protein	-	8e-15	At1g27650	ATU2AF35A	C.G.	S.X.	Please selecteFP Browser (expression)
0.67	0	952	PtpAffx.4454.2.S1_at	CV243134	hypothetical protein	-	5e-54	At1g27650	ATU2AF35A	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-10	67	PtpAffx.117893.1.S1_at	BU870048	-	-	6e-12	At1g27650	ATU2AF35A	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	9e-10	65	Ptp.7176.1.S1_a_at	CV237243	-	-	2e-13	At1g27650	ATU2AF35A	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.128286.1.A1_at	CK096773	-	-	4e-1	At5g46020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-2	40	PtpAffx.128286.1.A1_a_at	CK096773	-	-	4e-1	At5g46020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.159780.1.A1_at	CV264397	-	-	3e-15	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.107625.1.A1_at	CV273577	-	-	7e-3	At2g33730	DEAD box RNA helicase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	Ptp.6560.1.S1_at	CK093565	-	-	1e-1	At3g50460	HR2 (HOMOLOG OF RPW8 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	5e-69	262	Arabidopsis thaliana	At1g27650	839657	ATU2AF35A	U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	8e-38	159	Glycine max	GmaAffx.10520.3.S1_at	AW755577	-	-	7e-26	At1g27650	ATU2AF35A	C.G.	S.X.	Please select
0.35	7e-48	190	Hordeum vulgare	Contig4648_at	Contig4648	-	-	2e-10	At5g42820	U2AF35B	C.G.	S.X.	Please select
0.32	3e-16	87	Oryza sativa	Os05g0564200	AK070198.1	-	U2 snRNP auxiliary factor, small subunit	2e-22	At1g27650	ATU2AF35A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	3e-27	123	Triticum aestivum	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	C.G.	S.X.	Please select
0.34	4e-42	171	Vitis vinifera	1616583_at	CF403794	hypothetical protein LOC100266834	-	3e-19	At1g27650	ATU2AF35A	C.G.	S.X.	Please select
0.29	5e-24	111	Zea mays	Zm.4357.3.S1_at	AY104397.1	hypothetical protein LOC100191858 /// splicing factor U2af 38 kDa subunit	-	3e-22	At1g27650	ATU2AF35A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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