CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201307.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.201307.1.S1_at pmrna2597 hypothetical protein - 1e+0 At5g23950 C2 domain-containing protein S.X. H.G.
0.67 91.1 PtpAffx.63777.1.A1_a_at CV227832 hypothetical protein - 2e-7 At2g29380 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.57 84.2 PtpAffx.204607.1.S1_at pmrna9049 hypothetical protein - 9e-1 At2g45800 LIM domain-containing protein S.X. H.G.
0.57 84.2 PtpAffx.204607.1.S1_s_at pmrna9049 hypothetical protein - 9e-1 At2g45800 LIM domain-containing protein S.X. H.G.
0.40 67.0 PtpAffx.141565.1.S1_at AJ776570 acyl:coa ligase acetate-coa synthetase-like protein - 1e-3 At1g20560 AAE1 (ACYL ACTIVATING ENZYME 1) S.X. H.G.
0.12 19.6 PtpAffx.209577.1.S1_x_at pmrna18955 hypothetical protein - 7e-10 At1g11700 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.9 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.6 98.3 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.9 98.0 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.2 97.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.5 97.1 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.3 96.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 1e-158 559 Ptp.2791.1.S1_s_at DN497793 hypothetical protein - 1e+0 At5g44570 unknown protein C.G. S.X.
0.22 2e-89 329 Ptp.6012.2.S1_at CA825311 - - 7e+0 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein C.G. S.X.
0.35 1e-38 161 PtpAffx.28101.1.A1_at CV246911 hypothetical protein - 4e-1 At5g20190 binding C.G. S.X.
0.01 3e-2 40 PtpAffx.214375.1.S1_at pmrna27973 hypothetical protein - 4e-10 At5g57370 unknown protein C.G. S.X.
0.01 3e-2 40 PtpAffx.207201.1.S1_at pmrna14295 hypothetical protein - 3e-5 At3g19780 - C.G. S.X.
0.03 3e-2 40 PtpAffx.127680.1.A1_at CV248491 hypothetical protein - 7e-2 At1g68870 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.10747.1.S1_at CV232081 hypothetical protein - 1e-10 At5g57370 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.10747.1.S1_s_at CV232081 hypothetical protein - 8e-3 At5g57370 unknown protein C.G. S.X.
0.03 5e-1 36 PtpAffx.77482.1.S1_at BU823371 - - 9e-14 At3g16857 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g23950 832460 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA - - - C.G. S.X.
0.04 2e+0 34 Glycine max PsAffx.psHB038xE07f_at PsAffx.psHB038xE07f - - 8e-2 At3g28007 nodulin MtN3 family protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.29274.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.16922.1.S1_at CA615178 - - 9e+0 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1612499_at CD717149 - - 9e-2 At5g03530 RABC2A (RAB GTPASE HOMOLOG C2A) C.G. S.X.
0.04 6e-1 34 Zea mays ZmAffx.531.1.A1_at AI711719 - - 8e-1 At5g20370 serine-rich protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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