Gene omics information

Query gene ID	PtpAffx.201300.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.201300.1.S1_s_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.1276.1.S1_at	CK091051	hypothetical protein	-	9e-73	At5g26751	ATSK11	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.120301.1.S1_at	CF235521	-	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.146172.1.S1_at	CF228310	hypothetical protein	-	8e-18	At5g09880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	94.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1035	PtpAffx.201300.1.S1_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-6	54	PtpAffx.60130.1.S1_at	DN495929	hypothetical protein	-	1e-10	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	4e-4	46	PtpAffx.215182.1.S1_s_at	pmrna29226	hypothetical protein	-	2e-7	At1g17640	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-4	46	PtpAffx.213858.1.S1_at	pmrna27037	hypothetical protein	-	2e-11	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-4	46	PtpAffx.213858.1.S1_x_at	pmrna27037	hypothetical protein	-	2e-11	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	6e-3	42	PtpAffx.200972.1.S1_at	pmrna1900	hypothetical protein	-	4e-9	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	6e-3	42	PtpAffx.200972.1.S1_x_at	pmrna1900	hypothetical protein	-	4e-9	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.59531.1.S1_at	BU894470	hypothetical protein	-	3e-18	At5g04280	glycine-rich RNA-binding protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-2	38	PtpAffx.97994.1.S1_s_at	CX184253	hypothetical protein	-	3e-14	At4g36960	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	1e-34	147	Arabidopsis thaliana	At3g13224	820515	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-7	57	Glycine max	GmaAffx.69087.1.S1_at	AW705271	-	-	3e-22	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.19	3e-5	48	Hordeum vulgare	Contig8565_at	Contig8565	-	-	7e-10	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.11	6e-10	65	Oryza sativa	Os08g0492100	AK071053.1	-	Paraneoplastic encephalomyelitis antigen familyprotein	5e-8	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	7e-5	48	Triticum aestivum	Ta.5338.1.S1_at	CD453726	-	-	5e-8	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.37	6e-52	202	Vitis vinifera	1621900_s_at	CD798424	hypothetical protein LOC100246013	-	3e-49	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.12	3e-8	57	Zea mays	Zm.14455.1.S1_at	CD446715	hypothetical protein LOC100217268	-	5e-5	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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