Gene omics information

Query gene ID PtpAffx.201300.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9PtpAffx.201300.1.S1_s_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinS.X.H.G.
0.6791.1PtpAffx.1276.1.S1_atCK091051hypothetical protein-9e-73At5g26751ATSK11S.X.H.G.
0.5984.9PtpAffx.85760.1.S1_s_atCX181147hypothetical protein-6e-6At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.5380.5PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.4471.9PtpAffx.218468.1.S1_atpmrna34094hypothetical protein-0At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.4268.6PtpAffx.120301.1.S1_atCF235521--9e-2At1g54360TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)S.X.H.G.
0.4067.0PtpAffx.146172.1.S1_atCF228310hypothetical protein-8e-18At5g09880RNA recognition motif (RRM)-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.594.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.892.1GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.490.4GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001035PtpAffx.201300.1.S1_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.042e-654PtpAffx.60130.1.S1_atDN495929hypothetical protein-1e-10At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.134e-446PtpAffx.215182.1.S1_s_atpmrna29226hypothetical protein-2e-7At1g17640RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.074e-446PtpAffx.213858.1.S1_atpmrna27037hypothetical protein-2e-11At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.074e-446PtpAffx.213858.1.S1_x_atpmrna27037hypothetical protein-2e-11At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.206e-342PtpAffx.200972.1.S1_atpmrna1900hypothetical protein-4e-9At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.206e-342PtpAffx.200972.1.S1_x_atpmrna1900hypothetical protein-4e-9At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.032e-240PtpAffx.59531.1.S1_atBU894470hypothetical protein-3e-18At5g04280glycine-rich RNA-binding proteinC.G.S.X.
0.039e-238PtpAffx.97994.1.S1_s_atCX184253hypothetical protein-3e-14At4g36960RNA recognition motif (RRM)-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.551e-34147Arabidopsis thalianaAt3g13224820515RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA---C.G.S.X.
0.241e-757Glycine maxGmaAffx.69087.1.S1_atAW705271--3e-22At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.193e-548Hordeum vulgareContig8565_atContig8565--7e-10At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.116e-1065Oryza sativaOs08g0492100AK071053.1-Paraneoplastic encephalomyelitis antigen familyprotein5e-8At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.167e-548Triticum aestivumTa.5338.1.S1_atCD453726--5e-8At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.376e-52202Vitis vinifera1621900_s_atCD798424hypothetical protein LOC100246013-3e-49At3g13224RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.123e-857Zea maysZm.14455.1.S1_atCD446715hypothetical protein LOC100217268-5e-5At5g40490RNA recognition motif (RRM)-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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