CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201241.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.201241.1.S1_s_at pmrna2464 hypothetical protein - 2e-13 At1g50730 unknown protein S.X. H.G.
0.44 71.9 Ptp.5358.1.S1_at BI068669 hypothetical protein - 9e-32 At1g49040 SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) S.X. H.G.
0.33 57.5 PtpAffx.201242.1.S1_at pmrna2465 hypothetical protein - 3e-5 At1g50730 unknown protein S.X. H.G.
0.19 32.7 Ptp.7380.1.S1_s_at CX171704 hypothetical protein - 7e-68 At2g30710 RabGAP/TBC domain-containing protein S.X. H.G.
0.15 25.3 PtpAffx.213393.1.S1_at pmrna26202 hypothetical protein - 2e-3 At5g16280 unknown protein S.X. H.G.
0.08 12.9 PtpAffx.141519.1.S1_at AJ774599 hypothetical protein - 2e-120 At5g64070 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2165 PtpAffx.201241.1.S1_at pmrna2464 hypothetical protein - 2e-13 At1g50730 unknown protein C.G. S.X.
0.03 5e-2 40 PtpAffx.132380.1.A1_at BP931562 - - 2e-1 At2g17470 unknown protein C.G. S.X.
0.02 2e-1 38 PtpAffx.212846.1.S1_at pmrna25141 GRAS family transcription factor - 2e+0 At4g21850 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.02 8e-1 36 Ptp.2173.2.S1_a_at CK095547 hypothetical protein - 1e-6 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.7255.1.A1_at CK094447 - - 5e+0 At4g38225 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.50484.1.A1_at CV243447 - - 2e+0 At2g03740 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.01 3e+0 34 PtpAffx.3087.1.A1_s_at CV256705 hypothetical protein - 8e-66 At1g05570 CALS1 (CALLOSE SYNTHASE 1) C.G. S.X.
0.01 3e+0 34 PtpAffx.224342.1.S1_at pmrna42806 hypothetical protein - 2e-17 At3g53700 MEE40 (maternal effect embryo arrest 40) C.G. S.X.
0.02 3e+0 34 PtpAffx.222688.1.S1_at pmrna40249 hypothetical protein - 2e-23 At3g04620 nucleic acid binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-13 77 Arabidopsis thaliana At1g50730 841495 unknown protein F:unknown;P:unknown;C:unknown;MOPF - - - C.G. S.X.
0.17 1e-11 71 Glycine max Gma.7850.1.S1_at BE824354 - - 3e-3 At1g50730 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEf0019K16r2_at HVSMEf0019K16r2 - - 4e+0 At5g09270 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.22099.1.S1_at - - - 0 C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.83245.1.S1_at CA659822 - - 1e+1 At3g01940 unknown protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1622437_at CB971745 hypothetical protein LOC100266373 - 2e-1 At3g28700 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.15839.1.A1_at AY109200.1 - - 2e-2 At4g33660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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