CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201217.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.201217.1.S1_at pmrna2417 hypothetical protein - 2e-2 At2g14255 zinc ion binding S.X. H.G.
0.55 82.2 Ptp.5420.1.S1_s_at CK099218 hypothetical protein - 2e-30 At1g63770 peptidase M1 family protein S.X. H.G.
0.40 67.0 PtpAffx.84497.1.S1_s_at CF231611 hypothetical protein - 9e-17 At3g18140 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.40 67.0 PtpAffx.149265.1.S1_s_at CV131132 hypothetical protein - 3e-54 At2g14260 PIP S.X. H.G.
0.31 53.7 PtpAffx.100628.1.S1_s_at CF232037 hypothetical protein - 2e+0 At2g38350 unknown protein S.X. H.G.
0.29 50.5 Ptp.5539.3.S1_a_at CV273441 hypothetical protein - 9e-17 At4g26430 CSN6B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 93.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5 90.9 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-3 42 PtpAffx.31079.1.A1_at CV248983 hypothetical protein - 6e-6 At5g12390 FIS1B (FISSION 1B) C.G. S.X.
0.01 1e-1 38 PtpAffx.209347.1.S1_at pmrna18497 hypothetical protein - 3e-1 At2g39580 unknown protein C.G. S.X.
0.02 5e-1 36 PtpAffx.86393.1.S1_s_at CV264156 hypothetical protein - 2e-81 At3g23300 dehydration-responsive protein-related C.G. S.X.
0.02 5e-1 36 PtpAffx.8562.1.S1_at CV239625 hypothetical protein - 7e-13 At3g57090 BIGYIN C.G. S.X.
0.02 5e-1 36 PtpAffx.221898.1.S1_s_at pmrna39005 hypothetical protein - 2e-7 At3g44540 FAR4 (FATTY ACID REDUCTASE 4) C.G. S.X.
0.01 5e-1 36 PtpAffx.220320.1.S1_at pmrna36691 hypothetical protein - 8e-5 At3g07540 formin homology 2 domain-containing protein / FH2 domain-containing protein C.G. S.X.
0.01 5e-1 36 PtpAffx.208728.1.S1_at pmrna17305 hypothetical protein - 1e+0 At5g50700 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.146006.1.S1_at CX179301 hypothetical protein - 6e-7 At5g65180 - C.G. S.X.
0.02 5e-1 36 Ptp.7076.1.S1_at CK092656 hypothetical protein - 7e-66 At4g14360 dehydration-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-2 40 Arabidopsis thaliana At2g14255 2745525 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:membrane;MOFBPVA - - - C.G. S.X.
0.20 7e-25 115 Glycine max GmaAffx.8527.1.S1_at BU546273 - - 3e-22 At2g14255 zinc ion binding C.G. S.X.
0.03 3e+0 32 Hordeum vulgare rbags3n19_at rbags3n19 - - 8e-1 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) C.G. S.X.
0.08 2e-10 67 Oryza sativa Os11g0549700 AK072007.1 - The start codon is not identified. 1e-9 At2g14255 zinc ion binding C.G. S.X.
0.05 2e-3 44 Triticum aestivum TaAffx.119544.1.S1_at BJ268733 - - 4e-20 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1609016_at CD802400 - - 8e-1 At1g23570 unknown protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.8702.1.A1_at AI734669 - - 5e-19 At1g04140 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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