Gene omics information

Query gene ID PtpAffx.201216.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.201216.1.S1_atpmrna2414hypothetical protein-3e-7At4g37850basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.3357.5PtpAffx.203637.1.S1_atpmrna7214hypothetical protein-7e-35At1g11880transferase, transferring hexosyl groupsS.X.H.G.
0.2950.5PtpAffx.201998.1.S1_atpmrna3986hypothetical protein-6e-1At3g53650histone H2B, putativeS.X.H.G.
0.2034.6PtpAffx.26689.2.S1_atAI163264hypothetical protein-1e-22At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)S.X.H.G.
0.1932.7Ptp.3848.1.S1_atDN498717--3e+0At1g59722unknown proteinS.X.H.G.
0.0812.9PtpAffx.207645.1.S1_atpmrna15165hypothetical protein-2e-56At3g07990SCPL27 (serine carboxypeptidase-like 27)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
8.198.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.495.9GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.495.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.494.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.193.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.992.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.088.0GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.900710PtpAffx.204763.1.S1_atpmrna9379hypothetical protein-2e-14At2g22750basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.272e-654PtpAffx.205266.1.S1_atpmrna10444hypothetical protein-4e-6At2g22750basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.014e-136PtpAffx.225224.1.S1_atpmrna44415hypothetical protein-8e-5At4g27300S-locus protein kinase, putativeC.G.S.X.
0.024e-136PtpAffx.213218.1.S1_atpmrna25858hypothetical protein-2e-19At5g45790ubiquitin thiolesteraseC.G.S.X.
0.024e-136PtpAffx.208401.1.S1_atpmrna16701iaa-amino acid hydrolase 10-3e-21At5g56660ILL2C.G.S.X.
0.072e+034PtpAffx.9579.1.S1_atDN487886hypothetical protein-3e-2At4g37850basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.032e+034PtpAffx.89041.1.A1_atCV241010--3e-1At1g49180protein kinase family proteinC.G.S.X.
0.042e+034PtpAffx.28014.2.A1_atDN486202hypothetical protein-6e-2At1g10865-C.G.S.X.
0.022e+034PtpAffx.224453.1.S1_atpmrna43007hypothetical protein-7e-1At1g57990ATPUP18C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.113e-756Arabidopsis thalianaAt4g37850829941basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB---C.G.S.X.
0.298e-24111Glycine maxGma.151.1.S1_atAF069738.1--1e-5At4g37850basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.032e+032Hordeum vulgareContig17441_atContig17441--3e-1At2g42300basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.038e-342Oryza sativaOs01g0195700NM_188237.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein2e+0At3g02860zinc ion bindingC.G.S.X.
0.044e+032Triticum aestivumTa.16748.1.S1_atCA611863--2e+0At4g24400CIPK8 (CBL-INTERACTING PROTEIN KINASE 8)C.G.S.X.
0.035e+030Vitis vinifera1622845_atCF214275hypothetical protein LOC100243208-2e-18At1g52150ATHB-15C.G.S.X.
0.032e+032Zea maysZm.8024.1.A1_atBM072669--4e-1At3g49430SRp34a (Ser/Arg-rich protein 34a)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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