Gene omics information

Query gene ID	PtpAffx.201188.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.5	PtpAffx.201188.1.S1_at	pmrna2352	hypothetical protein	-	7e-8	At3g19610	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.65	88.6	PtpAffx.201118.1.S1_at	pmrna2202	hypothetical protein	-	3e-8	At5g09430	hydrolase	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.125735.1.A1_at	DN491719	-	-	7e-9	At1g79640	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.43630.1.A1_at	CV264054	-	-	2e+0	At5g16650	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.224559.1.S1_at	pmrna43206	hypothetical protein	-	7e-11	At1g22130	AGL104 (AGAMOUS-LIKE 104)	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.202083.1.S1_at	pmrna4151	hypothetical protein	-	6e-32	At2g26490	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.206203.1.S1_at	pmrna12320	hypothetical protein	-	4e-9	At5g35390	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.201517.1.S1_at	pmrna2990	hypothetical protein	-	3e-9	At1g20925	auxin efflux carrier family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.214319.1.S1_at	pmrna27849	hypothetical protein	-	3e-15	At5g19610	sec7 domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.30582.1.A1_at	CV260804	hypothetical protein	-	6e-19	At3g03900	adenylylsulfate kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
15.4	99.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
15.4	99.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
12.3	99.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.9	99.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
11.3	99.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.3	55.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.3	55.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.2	49.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	38	PtpAffx.205494.1.S1_at	pmrna10861	hypothetical protein	-	3e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.202240.1.S1_at	pmrna4491	hypothetical protein	-	3e-17	At4g01210	transferase, transferring glycosyl groups	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.201220.1.S1_at	pmrna2424	hypothetical protein	-	2e+0	At5g09630	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.201220.1.S1_s_at	pmrna2424	hypothetical protein	-	2e+0	At5g09630	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.70992.1.S1_a_at	AF263611.1	polyphenol oxidase	-	1e+0	At4g12600	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.218118.1.S1_at	pmrna33646	hypothetical protein	-	4e-1	At5g41560	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.214184.1.S1_at	pmrna27591	hypothetical protein	-	7e-30	At2g25600	SPIK (Shaker Pollen Inward K+ channel)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213268.1.S1_x_at	pmrna25951	hypothetical protein	-	3e-22	At3g10230	LYC (LYCOPENE CYCLASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213268.1.S1_s_at	pmrna25951	hypothetical protein	-	3e-22	At3g10230	LYC (LYCOPENE CYCLASE)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-8	59	Arabidopsis thaliana	At3g19610	821498	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	38	Glycine max	Gma.6151.1.S1_at	BQ611806	-	-	1e+0	At5g05410	DREB2A	C.G.	S.X.	Please select
0.01	5e-1	36	Hordeum vulgare	Contig10410_at	Contig10410	-	-	1e+0	At2g17305	-	C.G.	S.X.	Please select
0.01	5e-4	48	Oryza sativa	Os08g0541500	AK120995.1	-	Plant protein of unknown function DUF936 familyprotein	4e-1	At1g08760	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Triticum aestivum	Ta.1106.2.S1_at	BG904448	-	-	2e-1	At1g67265	RTFL21 (ROTUNDIFOLIA LIKE 21)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1617246_s_at	CF514982	similar to 40S ribosomal S4 protein	-	5e-94	At5g07090	40S ribosomal protein S4 (RPS4B)	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.14129.2.S1_at	AI677373	-	-	3e-19	At5g28060	40S ribosomal protein S24 (RPS24B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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