CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.201151.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.201151.1.S1_at pmrna2260 hypothetical protein - 3e-11 At2g21120 unknown protein S.X. H.G.
0.35 59.7 PtpAffx.206066.1.S1_at pmrna12024 hypothetical protein - 5e-29 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein S.X. H.G.
0.26 45.2 PtpAffx.90925.1.S1_s_at BU873869 hypothetical protein - 9e-17 At4g19003 VPS25 S.X. H.G.
0.22 38.3 PtpAffx.123000.2.S1_a_at CX186850 hypothetical protein - 2e-10 At1g36310 methyltransferase S.X. H.G.
0.19 32.7 PtpAffx.21874.2.S1_at CF231761 hypothetical protein - 1e-11 At5g41210 ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) S.X. H.G.
0.18 30.8 PtpAffx.139103.2.S1_s_at AJ777122 hypothetical protein - 5e+0 At4g14380 unknown protein S.X. H.G.
0.17 29.1 PtpAffx.132474.1.S1_at BP927927 hypothetical protein - 2e-101 At4g12230 esterase/lipase/thioesterase family protein S.X. H.G.
0.17 29.1 PtpAffx.205203.1.S1_at pmrna10311 hypothetical protein - 1e-50 At2g22120 protein binding / zinc ion binding S.X. H.G.
0.13 21.6 PtpAffx.39908.3.S1_a_at CX176310 hypothetical protein - 1e-71 At1g10430 PP2A-2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 97.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.6 96.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2 93.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1132 PtpAffx.215067.1.S1_at pmrna29028 hypothetical protein - 3e-5 At2g21120 unknown protein C.G. S.X.
0.18 9e-65 248 PtpAffx.52166.1.A1_at CV268523 hypothetical protein - 5e+0 At5g46115 unknown protein C.G. S.X.
0.17 1e-54 214 PtpAffx.70051.1.A1_at CV233658 hypothetical protein - 1e+1 Atcg00150 - C.G. S.X.
0.12 2e-19 97 PtpAffx.13679.1.A1_at CK096135 - - 5e+0 At2g16020 unknown protein C.G. S.X.
0.13 3e-12 73 PtpAffx.73050.1.S1_s_at CK106394 hypothetical protein - 3e-29 At4g38730 unknown protein C.G. S.X.
0.26 3e-12 73 PtpAffx.204903.1.S1_at pmrna9688 hypothetical protein - 2e-18 At4g09640 - C.G. S.X.
0.19 2e-10 67 PtpAffx.204286.1.S1_at pmrna8431 hypothetical protein - 2e-28 At2g21120 unknown protein C.G. S.X.
0.22 2e-10 67 PtpAffx.200729.1.S1_at pmrna1403 hypothetical protein - 8e-6 At4g38730 unknown protein C.G. S.X.
0.12 3e-9 63 PtpAffx.26053.1.A1_s_at CK116912 hypothetical protein - 7e-6 At4g09640 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-11 69 Arabidopsis thaliana At2g21120 816647 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFPBO - - - C.G. S.X.
0.13 3e-9 63 Glycine max GmaAffx.12487.1.S1_at BE347337 - - 4e+0 At5g38580 - C.G. S.X.
0.09 9e-4 44 Hordeum vulgare Contig16501_at Contig16501 - - 1e-10 At4g09640 - C.G. S.X.
0.11 4e-6 54 Oryza sativa Os05g0513400 AK069309.1 - - 2e-7 At1g71900 - C.G. S.X.
0.06 3e-11 69 Triticum aestivum Ta.20676.2.S1_a_at CA593533 - - 3e-19 At1g34470 permease-related C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1607818_at BQ793108 hypothetical protein LOC100246164 - 2e-24 At2g30410 KIS (KIESEL) C.G. S.X.
0.06 1e-2 40 Zea mays Zm.19231.1.S1_at CO517568 hypothetical protein LOC100274084 - 1e-30 At1g71900 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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